G257085


Basic Information

Item Value
gene id G257085
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 10202414 ~ 10203467 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU291782
TATGAAAGACTTAACTCACGATGGATTATTTATGACAGTCTTGAGAGCGTCCGCCAGGTCTTTGGACTCCATTGTGTTGATATCAAGAACAACAGCAGCTCCTTTGGTTTTCATGTGCATCATGTTATCAGGCTGATCACCAAACAGTGGCAAGCCCACCATCGGGACACCATGATAAATAGCCTCATACAGTCCATTTGTCCCGCCATGGGTAATGAAGGCCTTTGTTTTTGGATGTCCTGTCAGATAAAATGAAGTCAGTATCTTTCTGCCATCAATTATTGTTCTTTGTGTATAACGAGCACACATGACAACACTTTCCTTACCGAGCAAATCATTCTGTGGGATCCAGTCGTAGAGTTTTGTATTGGGGGCGAGGGTTTCTGGTGTTTTTCCACTGTAACGCCAAACAACCTGTGGAGACAGTACTGAGCACATGAACACCTGAGCAACAGAAAAGTTGGGTTCTGTAAACATTTTATTTATTTTTCCTACCGTGAAATGTGTTTTTAATGATAATGTATACTGGTAAACTGTTTAAGACACATCTACAGATCTCTGAGGTTGTTAATAGTACACGATTACATTCTGTGATGAACCTGTCTAGTTTGGGGTTTTAATTTACATATAGACATTGATCAGCGCACAAACACAGATCAGGCATAACATTATGATCACCTTCCTAATATTGTGTTGGTCCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU291782 True 702 lncRNA 0.41 2 10202414 10203467

Neighbor

gene id symbol gene type direction distance location
CI01000059_10112766_10123616 DNAJC25 coding downstream 78798 10112310 ~ 10123616 (-)
CI01000059_10078245_10087217 NA coding downstream 115197 10078202 ~ 10087217 (-)
CI01000059_10006537_10067807 NA coding downstream 134569 10006445 ~ 10067845 (-)
CI01000059_09996144_10002811 NA coding downstream 199552 9996053 ~ 10002862 (-)
CI01000059_09990989_09995182 RGS3A, RGS3 coding downstream 207163 9989503 ~ 9995251 (-)
CI01000059_10226065_10230940 FKTN coding upstream 22379 10225846 ~ 10230940 (-)
CI01000059_10234027_10257208 FSD1L coding upstream 29691 10233158 ~ 10257208 (-)
CI01000059_10273383_10276157 NA coding upstream 69151 10272618 ~ 10276157 (-)
CI01000059_10279018_10279718 NA coding upstream 75298 10278765 ~ 10279718 (-)
CI01000059_10280772_10283135 NA coding upstream 77187 10280654 ~ 10283135 (-)
G257299 NA non-coding downstream 104499 10097716 ~ 10097915 (-)
G257282 NA non-coding downstream 191608 10010080 ~ 10010806 (-)
G257276 NA non-coding downstream 226374 9975614 ~ 9976040 (-)
G257275 NA non-coding downstream 227819 9974360 ~ 9974595 (-)
G257272 NA non-coding downstream 233739 9968436 ~ 9968675 (-)
G257073 NA non-coding upstream 3381 10206848 ~ 10207701 (-)
G257014 NA other downstream 603406 9454216 ~ 9599008 (-)
G256890 NA other downstream 1220297 8981696 ~ 8982117 (-)
G255092 NA other downstream 3959622 6236106 ~ 6242792 (-)
G254203 NA other downstream 4964115 5237786 ~ 5238299 (-)
G253914 NA other downstream 5448332 4753538 ~ 4754082 (-)

Expression


Co-expression Network