CI01000062_00000216_00015634 (EPRS)


Basic Information

Item Value
gene id CI01000062_00000216_00015634
gene name EPRS
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 216 ~ 15712 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_00000216_00015634.mRNA
ATGGCACTAAACTTGACTATAAACAGTAGCAACCCACCTCTAGGGTGTAATCTTTTTAATGGCGTTGGAGTAAAATTAGAAATTAGAAATGAAGTGGCCTTGCTTAATAAAATCTTTGCAGAATCAGTGGAAAATGCGATAAACCAAAACCAAAATGGGTGTGACTGGTTTAATGCAGTTCAGGTGCAGTTCAGTGATGTGAACTCCATCACGCGTTATCTTGCCCGAGTGGCTCCGGCGTTGGGACTGTATGGTTCCAACATGATGGAGCAAACTGAGGTTGATCACTGGCTGGAGTTCAGTGCCCGTCGTCTCTGTGGTCAGTCAGATCTGTCTTCTGCTTTGGCAGATCTGGATAAAGCTCTGGCACTGAGAACCTTCCTGGTGGGTCACAGTGTGACACTAGCTGACCTCTGCATCTGGGCTGCTCTCAAAGCTCTCCTGAACCAGCACTACCAGGTCAATTTCAGGGGCAAGCTCATCATGCGTTTTGATGACACCAACCCTGAGAAGGAGAAAGAGGACTTCGAGAAGGTCATCTTGGAGGACGTGGCCATGCTACAGATCAAACCAGACCAGTTCACCTACACAAGCGATCACTTTCCCGCTATCCTGCGCATGGGGGAGAAACTTCTACAGGAGGGCAAGGCCTACATAGATGACACTCCTCCAGATGTCATGAAACAAGAAAGGGAGCAAAGGGTCGAGTCTCACAACCGTAACAACTCTGTGGAGAAGAACATGCAGATGTGGGAGGAGATGAAGAAAGGCACAGAGTTTGGCCAGACCTGTTGCATGAGAGCGAAGATTGACATGAGCTCCAACAATGGCTGCATGCGTGACCCCACGCTGTACCGCTGCAAGAACGCTGCTCATCCTCGCACCGGCAACACTTACAAAGTGTACCCCACATACGATTTTGCATGCCCCATTGTGGACAGTGTTGAGGGGGTGACTCATGCCTTGCGTACCACTGAGTACCATGACAGAGACGAGCAGTACTACTGGGTAATAAATGCTATTGGTCTGCGTAAACCGTACATCTGGGAGTACGCCCGACTCAATCTTAACAACACTGTGCTCTCCAAGAGGAAGCTCACCTGGTTTGTCGACCAGGGCTATGTGGATGGCTGGGATGACCCGCGTTTTCCCACAGTCAGAGGTGTGCTACGTAGAGGAATGACTGTGGAGGGACTCAAACAATTCATTGCAGCTCAGGGAGGCTCGAGATCTGTAGTCAATATGGAGTGGGACAAGATCTGGGCTTTCAACAAGAAGGTCATTGACCCAATAGCCCCAAGATACACTGCCCTACTAAGCTCGCAGGTTGTGCCAGTCTTCATTTCTGAAGCCAAGGAGGAGATGAAAGAGGTTGCCAAGCATCCTAAGAATGCAGATGTGGGAATGAAGCAGGTGTGGTATGGGCCAAAGGTCTTTATCGAGGGTGCTGATGCAGAAACATTCACAGAGGGCGAGACCGTGACCTTCATCAACTGGGGAAACATCATCATCACAAAAATCCACAGGGACAGCAGTGGAGCGATCTCATCTCTAGATGGTCGTCTGAACCTGGAGAACACTGATTATAAAAAGACCACCAAGATCACCTGGCTCGCTGAATCCAGCCGTGCCCCCCTCCTGCCCGCTGTGTGCATCAACTACCAGCACCTCATAACCAAACCAGTCTTGGGCAAGGATGATGATTTCAAGGATTACATCAACAAGAACAGCAAGATAGAGGAGAAGATGATTGGAGACCCTTGCTTGAAGGACTTGAAGAAAGGTGACATCATACAGCTGCAGAGACGGGGTTTCTATATCTGTGATCAGCCTTATGAGCCAATCAGCTGCAAGGAGAGTCCCTGTGTCCTGCTCTATATCCCAGACGGACACACGAAAGAGATGCCCACTGCTGGCTCCAAGGAGAAGAGCAAGAGCCAGACAGCTGCTAAACCTGTGAAGGCTGAGTCTGCTCCTCCGAGCAAAGCCAAGCTGGCTCCTGTCTCCAGCCCTGCGCCATCAGCATCAGGAGACGTTTCCTCCCTATACTCCAGCATTGTGGCTCAGGGAGACCTGGTCAGGCAACTCAAGACAGACAAGGCGCCTAAAGAGCAAGTGGATGCCACTGTAAAGCAGCTCTTGGCTTTGAAGTCAGAGTTTAAACAACTGACTGGACAGGAGTACAAACCTGGCATGGCTCCACCTACTTCTGCCCCAGCACAGAAGAGCTCTGCCCCAACTCCTGCAGTAGGAAGTTCAAGCCCCGCCTCCACCGGTTGTCCGTTCACTCGTGTTGCTGAACAAGGCGAAGTGGTCAGAAAACTGAAGGCTGAAAAAGCACCCAAGGAGCAAGTAGATGCTGCAGTAAAACAGCTCTTGGCTCTCAAAGCTGAGTTCAAACAGCTCACTGGTCAGGACTACAAACCAGGCATGGCTCCTCCCACAGCATCTCCCCCACAGTCCACCCTTTCATGTGACTTCTCCCCTGCTGCCATATATGGGCTTGTGTCTGAACAGGGGGAGATGGTCAGAAAGCTGAAAGCAGAGAAAGCACCAAAAGACCAGGTTGATGCAGTAGTGAAGCAGCTTTTGGCTCTGAAGGCAGAATATAAGCAGGTGACGGGACAGGACTACAAACCTGGAGTTCCCCCTGCTGGTAGCTCTCCATCAACTCCAGCTCCAGCTCAGCCTGCTGCCACCACGGTTTCAGCGTCTGTCTCCTCTGACAGCTCTCCTAAGTCCATTTATGATCGAGTCACTCAACAAGGAGACCTTGTGAGGAAACTGAAAACAGACAAGGCACCCAAGGTTTTTGACTTCTCTCAGTTTTGGTCATAG

Function

symbol description
eprs Predicted to enable several functions, including RNA stem-loop binding activity; proline-tRNA ligase activity; and protein homodimerization activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; prolyl-tRNA aminoacylation; and regulation of long-chain fatty acid import into cell. Predicted to act upstream of or within cellular response to interferon-gamma. Predicted to be located in cytosol and plasma membrane. Predicted to be part of GAIT complex; aminoacyl-tRNA synthetase multienzyme complex; and ribonucleoprotein complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human EPRS1 (glutamyl-prolyl-tRNA synthetase 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14163 EPRS; bifunctional glutamyl/prolyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_00000216_00015634.mRNA False 2838 mRNA 0.50 18 216 15634

Neighbor

gene id symbol gene type direction distance location
CI01000062_00205449_00208640 NA coding upstream 189815 205449 ~ 208640 (-)
CI01000062_00215004_00216872 NA coding upstream 198868 214502 ~ 216872 (-)
CI01000062_00459377_00459927 NA coding upstream 443543 459177 ~ 460140 (-)
CI01000062_00491892_00492929 NA coding upstream 476215 491849 ~ 493776 (-)
CI01000062_00501459_00565291 CCDC88C coding upstream 485825 501459 ~ 565291 (-)
G258329 NA non-coding upstream 4880 20514 ~ 20882 (-)
G258369 NA non-coding upstream 97922 113556 ~ 113896 (-)
G258387 NA non-coding upstream 120966 136600 ~ 136845 (-)
G258397 NA non-coding upstream 129876 145510 ~ 145818 (-)
G258400 NA non-coding upstream 131960 147594 ~ 148028 (-)
G261400 NA other upstream 3929801 3945435 ~ 3957385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011627 eprs1 coding NC_007128.7 CM002901.2 39697621 ~ 39739994 (+)