XLOC_010265 (tap1)


Basic Information

Item Value
gene id XLOC_010265
gene name tap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 48678655 ~ 48708045 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020284
CAGCCATGGGGGTTTTCCTCTCATACACGCTTTCAGTTTCAGATTTGGATATAATCTGCAGGTTTCACGCGGAGTGCTGTCGTCTGTTTACCAGTTTTAAACTATAAAACTTTAAATAGATGCCGACGACGATAGTGAAAACTGAATCCTGATATTATAAAGCAGCGTTGCAGTTGTATCTACTAACAAGTGCTGGAGATGAAGGATAAGATGGCCGTTCCTCTGTTCGTCCTGTTGGCATTGTGTGTGGACGTGTGCGCCGTGTTGTCCATTGGTGCCATCCAGCTGTCTCCGTCCTTCATCAATAACTCCTTCATCCTGCTGTGGTTGGGTGGACTGATCCGAACATGTCTTCTGCTCTTCATCTCCTTCTCCTACTCTGGCAGTCCGGCGTGGATGAGAGGATTGGAGGGTGTTCAAACGGCTGTAATCCACGGTCTTCTCTATCCAGTCTATATCTCCTTCCTCTGGGCGTATGGCTGGTCTACTGTGGAGCTGGTGTGGGGTTGGCACTCTTGGCAAGGCCTTGTGCAGGGCTATTTTGTGTTGGGTTTGTCTCTCTTAATCTGGAAACGCCATGTACCTACTATCCTGCTGACTGCAAAAAAAGAGAGAACAGAAAAGAAGGGCAAGGCTTCTCTGCAAAGACTGCTGGGATACATGAAGCCTTTCAGTGGACGTTTTGCAGCCGTCTTCTTCTTTGTGGTCATTTCTTCACTAGGTGAAATGGCGATTCCTCATTACACTGGGAAAATGACAGACTGGATCATGAATGAAGACGAACCCGAGGCCTTTAACCACGCTATCACTGTCATGACCCTGATGACCATTATGAGcgctgtgtgtgagtttgtgtgtgaccTCATCTACAACATCACCATGAGCCGAATACACACGTCCATCCAAGGACTCGTCTTCCAGGCTGTACTAAAACAGGATATTGCGTTCTTCGATAAAGCTACCACAGGGGACATCGTGTCTCGCATCACCACCGACACAAACACCATGAGTGAGTCTCTGAGTGAGAAGCTGAGTCTGCTGATGTGGTACTTCATGCGGGTCATTTTCCTCTTCGGCTCCATGTTAATGCTCTCCACCAGACTCTGCTGCTTCACTCTGCTCGGCCTGCCCGTCATCTGGATCATCCCGGAAATTTTTGGACGGTTTTACCAGAAACTTTCGGCACAAGTGCAAGATTCTTTGGCCAAGGCGAATGAAGTGGCTACAGAAACCTTTTCTTCCATGAAAACAGTGAGGAGCTTTGCTAATGAGGATGGAGAAACTGAGAGATACAGAAAATGCTTGGAGGACACGTTTGCACTGAACAAAGTGGAAGCCGCTGCTTATGCTGTATCAACATGGACCAATAGTATGTCCAGTCTGGCTTTGAAGGTCAGTATTTTATACTACGGAGGACGGCTTGTGACAGGAAGTGATGTCAGCAGTGGTGATCTGGTGTCCTTTGTCCTCTACGAGCTTCAGTTCACATCAGCTGTGGAGGTTCTGATGTCTTACTGGCCACATGTAAAGAAAGCAGTCGGAGCTTCAGAAAAGATCTTTGAGTATGTGGACAGAAAGCCTGATGTTCCTCCAGATGGATCACTCGCTCCGAAGACTCTAAAAGGACACGTGCAGTTCAGAAATGTCACATTTGCTTATCCAAAGCGTCCGGACACAGATGTGCTGAAGAACGTTTCTCTTGAGCTGAAAGCGGGCAAGATCACAGCACTCGTGGGTCCATCGGGTTCTGGAAAAACCACAGTTGTGAGTTTGCTGGAGAGATTTTACCAGCCTCAAAACGGAGAGATTTTATTGGACCAGAAGCCACTGCTGAGCTATAAGGACCAATATCTGCACGAGAAGATTAGTGTGGTTTCACAGGAGCCGGTTCTGTTTGCTCGCTCAGTGCGTGAAAACATCAAATACGGCAAAGAAAACGCCACAAATGAAGAAATATATGCTGCTGCCAGGCTGGCCAATGCACATGACTTCATTTCCAGTTTACCTAAAGGATACGATACTGATGCTGGAGAGAAGGGCGGTCAGGTGTCTGGAGGTCAGAAACAGCGAATCGCCATTGCCAGAGCTCTGATCCAGAAACCCCAGATTCTGGTGCTTGATGATGCCACCAGTTCACTGGACACTGAGAGTGAACACCGGGTGTACAGCGCTCTGAAGAAGGAGCTGCAGAGCTGCACGGTTCTGCTCATCTCCCACAGACTGAGCGGAGTGGAAAACGCAGACCACATCCTCTTCCTCCGGGAAGGAGAGCTGGTGGAGGAGGGAAACCATCAGCAGCTGCTGGACAAACAGGGATTCTACGCTGAGTTCGTCAAACAGCAGAACACAGCCATCCATCGCAATGCAGACAACGGTACAAACAGCAGCCAGTGATGAACATCTGCAATCAGTCTCTGCTGTCCTGAAATCACATCACACTGTTTATTCGCCATTagtatatacaattgaagtcagaattaacagctctcctgtatatttttccctattttctgtttaacggaaagaagatatttgcaacccatttctaaacataataaacataatttacataactca
>TCONS_00020285
ATGAAGGATAAGATGGCCGTTCCTCTGTTCGTCCTGTTGGCATTGTGTGTGGACGTGTGCGCCGTGTTGTCCATTGGTGCCATCCAGCTGTCTCCGTCCTTCATCAATAACTCCTTCATCCTGCTGTGGTTGGGTGGACTGATCCGAACATGTCTTCTGCTCTTCATCTCCTTCTCCTACTCTGGCAGTCCGGCGTGGATGAGAGGATTGGAGGGTGTTCAAACGGCTGTAATCCACGGTCTTCTCTATCCAGTCTATATCTCCTTCCTCTGGGCGTATGGCTGGTCTACTGTGGAGCTGGTGTGGGGTTGGCACTCTTGGCAAGGCCTTGTGCAGGGCTATTTTGTGTTGGGTTTGTCTCTCTTAATCTGGAAACGCCATGTACCTACTATCCTGCTGACTGCAAAAAAAGAGAGAACAGAAAAGAAGGGCAAGGCTTCTCTGCAAAGACTGCTGGGATACATGAAGCCTTTCAGTGGACGTTTTGCAGCCGTCTTCTTCTTTGTGGTCATTTCTTCACTAGGTGAAATGGCGATTCCTCATTACACTGGGAAAATGACAGACTGGATCATGAATGAAGACGAACCCGAGGCCTTTAACCACGCTATCACTGTCATGACCCTGATGACCATTATGAGcgctgtgtgtgagtttgtgtgtgaccTCATCTACAACATCACCATGAGCCGAATACACACGTCCATCCAAGGACTCGTCTTCCAGGCTGTACTAAAACAGGATATTGCGTTCTTCGATAAAGCTACCACAGGGGACATCGTGTCTCGCATCACCACCGACACAAACACCATGAGTGAGTCTCTGAGTGAGAAGCTGAGTCTGCTGATGTGGTACTTCATGCGGGTCATTTTCCTCTTCGGCTCCATGTTAATGCTCTCCACCAGACTCTGCTGCTTCACTCTGCTCGGCCTGCCCGTCATCTGGATCATCCCGGAAATTTTTGGACGGTTTTACCAGAAACTTTCGGCACAAGTGCAAGATTCTTTGGCCAAGGCGAATGAAGTGGCTACAGAAACCTTTTCTTCCATGAAAACAGTGAGGAGCTTTGCTAATGAGGATGGAGAAACTGAGAGATACAGAAAATGCTTGGAGGACACGTTTGCACTGAACAAAGTGGAAGCCGCTGCTTATGCTGTATCAACATGGACCAATAGTATGTCCAGTCTGGCTTTGAAGGTCAGTATTTTATACTACGGAGGACGGCTTGTGACAGGAAGTGATGTCAGCAGTGGTGATCTGGTGTCCTTTGTCCTCTACGAGCTTCAGTTCACATCAGCTGTGGAGGTTCTGATGTCTTACTGGCCACATGTAAAGAAAGCAGTCGGAGCTTCAGAAAAGATCTTTGAGTATGTGGACAGAAAGCCTGATGTTCCTCCAGATGGATCACTCGCTCCGAAGACTCTAAAAGGACACGTGCAGTTCAGAAATGTCACATTTGCTTATCCAAAGCGTCCGGACACAGATGTGCTGAAGAACGTTTCTCTTGAGCTGAAAGCGGGCAAGATCACAGCACTCGTGGGTCCATCGGGTTCTGGAAAAACCACAGTTGTGAGTTTGCTGGAGAGATTTTACCAGCCTCAAAACGGAGAGATTTTATTGGACCAGAAGCCACTGCTGAGCTATAAGGACCAATATCTGCACGAGAAGATTAGTGTGGTTTCACAGGAGCCGGTTCTGTTTGCTCGCTCAGTGCGTGAAAACATCAAATACGGCAAAGAAAACGCCACAAATGAAGAAATATATGCTGCTGCCAGGCTGGCCAATGCACATGACTTCATTTCCAGTTTACCTAAAGGATACGATACTGATGCTGGAGAGAAGGGCGGTCAGGTGTCTGGAGGTCAGAAACAGCGAATCGCCATTGCCAGAGCTCTGATCCAGAAACCCCAGATTCTGGTGCTTGATGATGCCACCAGTTCACTGGACACTGAGAGTGAACACCGGGTGTACAGCGCTCTGAAGAAGGAGCTGCAGAGCTGCACGGTTCTGCTCATCTCCCACAGACTGAGCGGAGTGGAAAACGCAGACCACATCCTCTTCCTCCGGGAAGGAGAGCTGGTGGAGGAGGGAAACCATCAGCAGCTGCTGGACAAACAGGGATTCTACGCTGAGTTCGTCAAACAGCAGAACACAGCCATCCATCGCAATGCAGACAACGGTACAAACAacttaactaggttaaacaTACATTAA

Function

symbol description
tap1 Predicted to enable ABC-type peptide transporter activity. Predicted to be involved in peptide transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in several diseases, including MHC class I deficiency; autoimmune disease (multiple); bronchial disease (multiple); diffuse scleroderma; and lung disease (multiple). Orthologous to human TAP1 (transporter 1, ATP binding cassette subfamily B member).

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0042825 TAP complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0046979 TAP2 binding molecular_function
GO:0042287 MHC protein binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0015433 ATPase-coupled peptide antigen transmembrane transporter activity molecular_function
GO:0015440 ATPase-coupled peptide transmembrane transporter activity molecular_function

KEGG:

id description
ko02010 ABC transporters
ko04145 Phagosome
ko04612 Antigen processing and presentation
ko05170 Human immunodeficiency virus 1 infection
ko05168 Herpes simplex virus 1 infection
ko05163 Human cytomegalovirus infection
ko05169 Epstein-Barr virus infection
ko05340 Primary immunodeficiency
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050517-43 Predicted to enable ABC-type peptide transporter activity. Predicted to be involved in peptide transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in several diseases, including MHC class I deficiency; autoimmune disease (multiple); bronchial disease (multiple); diffuse scleroderma; and lung disease (multiple). Orthologous to human TAP1 (transporter 1, ATP binding cassette subfamily B member).

Ensembl:

ensembl_id ENSDARG00000079766

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020284 False 2577 mRNA 0.47 13 48678655 48705831
TCONS_00020285 True 2211 mRNA 0.49 13 48682309 48708045

Neighbor

gene id symbol gene type direction distance location
XLOC_010264 NA coding upstream 1621 48668314 ~ 48677034 (+)
XLOC_010263 pbx2 coding upstream 35464 48616220 ~ 48643191 (+)
XLOC_010262 ext1a coding upstream 105145 48460873 ~ 48573510 (+)
XLOC_010261 CU183074.1 coding upstream 421525 48257013 ~ 48257130 (+)
XLOC_010260 CU929195.1 coding upstream 520232 48158309 ~ 48158423 (+)
XLOC_010266 brd2b coding downstream 6003 48714048 ~ 48747788 (+)
XLOC_010267 si:ch73-31d8.2 coding downstream 45619 48753664 ~ 48756697 (+)
XLOC_010268 CABZ01068499.1 coding downstream 297276 49005321 ~ 49017878 (+)
XLOC_010269 plcl2 coding downstream 380653 49088698 ~ 49160181 (+)
XLOC_010270 NA coding downstream 453374 49161419 ~ 49164092 (+)
XLOC_010259 CR388140.1 non-coding upstream 655247 48023293 ~ 48023408 (+)
XLOC_010258 NA non-coding upstream 679244 47998832 ~ 47999411 (+)
XLOC_010272 CABZ01059142.1 non-coding downstream 839726 49547771 ~ 49547886 (+)
XLOC_010273 NA non-coding downstream 893564 49601609 ~ 49618621 (+)
XLOC_010278 NA non-coding downstream 1527335 50235380 ~ 50260317 (+)
XLOC_010280 NA non-coding downstream 1591635 50299680 ~ 50347897 (+)

Expression


Co-expression Network