CI01000062_01210373_01227487 (MTA1)


Basic Information

Item Value
gene id CI01000062_01210373_01227487
gene name MTA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 1210060 ~ 1227487 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_01210373_01227487.mRNA
GGGGAAATGCTGTGTTACACTTCTGAATGAGACGGAAGCCCTCAAGTCCTATTTAGACAGAGAGGATGCCTTTTTCTACTCGCTGGTGTACGACCCTCAGCAGAAGACTCTGCTGGCTGATAAGGGAGAAATCAGAGTGGGCAATAAGTACCAGGCTGACATCACTGACCTCCTCAAAGAGGGAGAGGATGATGGTCGGGAGCTTGAAAAACTGGAGGAGAAGGTGTGGGATCCCAGCAACCCTCTCATCGAGAAACAGATAGACCAGTTCCTCGTCGTGGCTCGGTCTGTGGGTACGTTTGCGCGGGCTCTAGACTGCAGCAGTTCAGTTCGGCAGCCCAGTCTGCACATGAGCGCTGCGGCAGCCTCCAGAGACATCACACTGTTTCACGCCATGGACACTTTGCATAAGAATGGCTATGACATGACACGGGCCATCGCAGCGCTGGTACCCCAGGGTGGGCCGGTGCTCTGCAGGGATGAAATGGAGGAATGGAGCGCATCTGAAGCCAACTTGTTCGAGGAAGCGCTCGAGAAATACGGCAAAGACTTCACTGACATCCAGCAAGACTTTCTTCCTTGGAAGTCTCTGACCAGCATCATTGAGTATTACTACATGTGGAAGACCACAGACAGATACGTTCAGCAGAAACGATTAAAAGCAGCTGAAGCTGAGAGCAAGTTAAAGCAGGTTTACATCCCAAACTATAACAAGCCCAACCCTAACCAACTGAGCATGAACAGTGTGAAACCAGGGCTGGTGAATGGAGCCGGGGCGCTTCCAGGAGCACCAGGCCAGCCCGTCGGATTGGGCCGAGCATGCGAGAGCTGTTACACCACCAGCTCGTATCAGTGGTACTCATGGGGGCCGCCCAACATGCAGTGCCGCCTGTGTGCCTCCTGCTGGACTTACTGGAAAAAGTACGGAGGTTTGAAGATGCCAACCAGACTGGATGGAGAGAGGCCCGGACCCAACCGCAACAACATGAGTCCTCACGGTCTGCCTGTGAGACACAGCGGAAGCCCAAAGTTTGCGGTTAAGACCAGACAGGCTTTCTACCTGCACACGTCCCAGCTGACGAAAGCGGCTCGCCGCGTCTGCCAGGACCTGTTGAGATCCAGATACTTGGCCAGACACCCGTACATGCCTGTCAACACTGCCGCTATCAAAGCCGAGTGTGAGTATTTGCTTTCAGACATGAATGTGCAAACCCATTTTAATCATGTATTATCCAAACATGTTCCAGAGGCCCACCCTTGCCCACCCAAATCAGATCCTCCACGAGGAGCCACCATTTCCACAGGCAGCCTGACGCCCATCAAATCCACGCCCATCCTCAACAACGGCTCCCCAACCATCCTGGGCAAACGCTCCTACGAGCAGCACAACGGCTTGGATGGACCCAAACCCAAAGTTCTGGCTCCTCAGTGGGAAATAATGGCCAAGAGGGTGTCTGAACAAGGCCGAACTCCCTCTGGCCTGCAGGATGAGGTTCATGAACTGGACTGACCTCTGCTTTGACGACTGACTGCTATTCTCTAACCAGATGAGCAGGTACAGGTCTCCTGACTAGGGCTATATCTAACAATTATTTGTGTAATCGGTTGATTATTTTGATGATTGAGTAATCGGATACATTTTTTGTGGTAATAAAAATAGACCTAAGTGAACCTTTAGTGAACCTAGCCTTTAAAATGACAAAAACAATAATGAGGCAATAATAATTGGTTCAAATAAAGTATCAAAAGCAAGTAATCATATGATTTAATTGAACAACACTGTAAAATACATAATGTAATATAGATAATCTGAACATAATCAA

Function

symbol description
mta1 Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Predicted to be involved in several processes, including histone deacetylation; negative regulation of transcription by RNA polymerase II; and response to ionizing radiation. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Orthologous to human MTA1 (metastasis associated 1).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K11660 MTA; metastasis-associated protein MTA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_01210373_01227487.mRNA True 1823 mRNA 0.50 12 1210060 1227487

Neighbor

gene id symbol gene type direction distance location
CI01000062_01191296_01194695 TMEM229B coding downstream 15365 1190693 ~ 1194695 (-)
CI01000062_01131089_01166027 NA coding downstream 43453 1130865 ~ 1166607 (-)
CI01000062_00963254_00999381 PLEKHH1 coding downstream 210679 963206 ~ 999381 (-)
CI01000062_00953238_00953543 NA coding downstream 256045 952511 ~ 954015 (-)
CI01000062_00877361_00878217 NA coding downstream 331385 875653 ~ 878675 (-)
CI01000062_01361295_01382538 ELMSAN1B coding upstream 133808 1361295 ~ 1382771 (-)
CI01000062_01401358_01417189 TMEM62 coding upstream 172918 1400405 ~ 1417189 (-)
CI01000062_01419375_01443524 HADHA, HADHAB coding upstream 191600 1419087 ~ 1443699 (-)
CI01000062_01747676_01766964 IMPG1B coding upstream 520189 1747676 ~ 1766964 (-)
CI01000062_01787025_01788167 HTR1E, HTR1B coding upstream 559529 1787016 ~ 1788512 (-)
G259465 NA non-coding downstream 104150 1019507 ~ 1105910 (-)
G259421 NA non-coding downstream 431080 778684 ~ 778980 (-)
G259419 NA non-coding downstream 448099 761758 ~ 761961 (-)
G259417 NA non-coding downstream 461946 747864 ~ 748114 (-)
G259516 NA non-coding upstream 105346 1332833 ~ 1340498 (-)
G259597 NA non-coding upstream 262443 1489930 ~ 1499660 (-)
G259598 NA non-coding upstream 277560 1505047 ~ 1510116 (-)
G259619 NA non-coding upstream 298538 1526025 ~ 1526401 (-)
G259630 NA non-coding upstream 302523 1530010 ~ 1530435 (-)
CI01000062_00000216_00015634 EPRS other downstream 1194348 216 ~ 15712 (-)
G261400 NA other upstream 2717948 3945435 ~ 3957385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location