CI01000062_01419375_01443524 (HADHA, HADHAB)


Basic Information

Item Value
gene id CI01000062_01419375_01443524
gene name HADHA, HADHAB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 1419087 ~ 1443699 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_01419375_01443524.mRNA
AGTGCGCCGAGCAACTGATAATTCGCGAGTTGCCAATAGCAACGCGTTTATTTTCAACATTAATCTCTTGTTTATGCCATAGACATCTAAACCCGTTTTTGTCAGGAAATGTAAGTTATTAAAAATACTATTCGCGAAACTAATTATTATTTTTATTTGCCGTTGAAGCTAAATAATGGGTTTGGGACAGAATCGGGTGCGTTTGCTGTGTATGCTGTCTTTAACGCTTGTGTTTTTTATTGTTGAAGTTGTGGTAAGCAGGATAACAGCATCTCTCGCAATGTTATCAGACTCTTTTCATATGCTGTCGGATGTAATAGCCTTGGTAGTGGCTTTGATTGCCGTTAGTTTTGCGGAGACAACTCGAGCCACAAGTAAAAACACGTACGGATGGATCCGCGCAGAAGTGATGGGAGCTTTAGTGAACGCCGTGTTTTTGACGGCCCTCTGCTTCACTATTCTTCTAGAAGCCGTCGAGCGCTGCACGCTGCCTCACGAGATTGAGAATCCACGCGTGGTCATTTGGGTTGGCCTGGCTGGTCTCCTGGTGAATGTACTTGGACTTTTTCTGTTCCACGGACACGCAGGGTTTGGTGGGCACGGGCACTCTCATGGAGGGTTTGGTGGGCACGGGCACTCTCATGGTCACAAGACAAAAAGCAGAGATTATGAAAAACCAAAGGCACACGAAGAAGCACATAATCTCATGATAAACAGCAGCAGTTCTCAAGGAGATCAAACTTCTGATCTGAAATCAGACAGCCTAAACATCAGAATCACTGCCAACGGCTCATTGGAGGACCTGGATCACAATTCCGAGTCGGCTTCCCAGTTGAACATGCGCGGAGTGTTCCTGCACGTGCTCGGGGATGCGTTAGGTTCCGTCATTGTGGTAGTCAACGCCTTGATTTTCACTTTCGTGTGGACGCCATGCCACAGCGACGAGATCTGTTTCAACCCCTGCCGCAGCAGCCACTTGACTGAACACCAGCATGTTAATACCACAGTCCTGAGCATATCCAAACCACATGACAGGACCCCCAGAACCGTATCTGTAGCCGGACCATGTTGGGTGCTTTACCTGGACCCAACGTTATGTCTAATAATGGTGTGTATTTTGCTGTACACAACTTTCCCTCTCCTAAAGGAGTCGGCTCTGATCCTGCTACAAACAGTACCCGAACAGATCGATATGCACAAGCTGAATGGGAAACTACAGAGCCTGGATGGTGTTATAGCTGTTCATGACCTGCATATCTGGCAGCTGGCCGGGTCTCGCATTATTGCAACCGCTCACATCAAATGCGCAGATCCAGCTACTTACATGGACGTAGCCAAACGCATTAAAGACATTTTCCATGATGAAGACATCCATGCTACTACTGTTCAGCCAGAGTTTGCTTCCATTTCTGAAGGGTCTGGTGACTCACCATGTGAGCTTTCCTGTCAAAGTCAATGCAAACCCAAGCTATGTTGTAATCCGACCAAAAGGGCTAAGCCGGAGTCGGAGCTGGCCAAGATTAAGGAAAAGACCTGCAGGCATCCCGTAGGATGGGCTCGTACACACGTGAGCTATGAGGTCAAGGGAGATGTAGCTGTGATCCGCATGAATGATCCCAATGCGAGGGTCAACACACTGTCTATTCAAATGCAAAGGGAGATGACAGAAGTTATGGATGAGGTTTGGGGAAACAATGCTGTCCAGAGTGTTGTTCTCATCTCGACCAAACCCGGCTGCTTCATCGCAGGGGCAGACATTAGCATGATTCAGGCCTGTAAGAGTGCAGAGGAGGTCACTGGCCTTTCTCAGGAGGGCCAGAGGATGTTTGAGAAGATTGAGAAGTCTCCTAAGCCCATTGTCGCTGCCATTAATGGATCGTGTCTTGGTGGAGGCTTAGAGTTTGCCATCGCCTGTCAGTACAGAATAGCCACCAAGAGTAAGAAGACGGTTCTGGCCTGCCCTGAGGTCATGCTCGGCCTTCTGCCTGGAGCTGGAGGAACACAGAGACTGCCCAAAATGCTTGGTCTTCCCAGTGCTTTTGATATAATGCTAACAGGAAGGAACATCCGTGCAGATAAGGCTAAGAAAATGGGACTGGTTCACCAGCTGGTGGATACCCTTGGGCCTGGACTGAAGAGTCCAGAAGAGAGGACTATTGAATACCTGGAGGAAGTAGCTGTGGAAGCTGCCAGAGGTCTTGCTAACAAGAAAATCTCAACTACCAAAGAAAAGGGCTTGATGCAGAAAATTCAAGACTACGTCATGAGTTATCCGTTTGTGAGACAACAGATCTACAATACAGTTGAGAAGAAAGTCATGAAACAGACCAAGGGACTGTACCCCGCACCACTGAAAATAATTGAGAGTGTGAAGGCTGGTGTTGAACAGGGTCTGACTGCAGGGTACCTGGCTGAGTCACAGAATTTTGGCAAGTTAGCCATGACCTCTGAGAGTAAAGCACTTATTGGCCTTTACCACGGTCAGGTCACATGCAAGAAGAATCGATTCGGAACCCCTCAAAAGGAAGTAAAAACACTTGCGATCTTGGGAGCGGGTCTGATGGGTGCTGGCATTGCTCAAGTGACTGTAGATAAAGCCATTCACACCATTCTTAAGGACACCGCACTGGAGGGACTCAGTCGTGGAGAGCAGCAGGTCTATAAAGGGCTAAATGACAAAACCAAGAAGAAGAGCATAACATCCTTTGAAAGGGACAGTTTTCTGTCCAACCTAACGGGACAGCTAGACTACAATGGCTTTAATAAAGCTGACATGGTCATTGAAGCCGTTTTTGAGGACCTGAGTATCAAACACAAAGTCCTAAAAGAAGTTGAAGCAGTGATTCCTCCACATTGTATATTTGCTACCAACACTTCTGCTTTACCAATCAAAGATATTGCAGCTGTGAGCAAGCGGCCTGATAAGGTAATAGGAATGCACTACTTTTCTCCAGTCGACAAGATGCAGCTACTGGAGATCATCACCACTGACAAAACCTCCAAGGACACAACTGCCTCAGCGGTGGCGGTCGGCCTGAAGCAAGGCAAAGTCATTATCGTCGTTGGGGAAGGTGTCGACCCCAAGAAGCTGGACTCCCTGACCACAGGTTTTGGCTTCCCTGTGGGTGCAGCTACCCTGGCTGATGAAGTGGGCATTGATGTGGCAGCTCATGTGGCCGAAGACCTCGGCAAGGCCTTCGGCTCCAGATTTGGAGGAGGAAATGTTGAGGTCTTGAAGACCATGGTGGAGAAAGGATTCAAAGGCCGGAAATCAGGCAAGGGCTGCTACATCTACCAGCCAGGACTTAAACGCAGAGATGTGAACCCAGAAGCTCTGGAGATTTTGGAAACATACAAGCTGACGCCAAATGCTGCAGTAACTTCTGACTCAGATATACAGTACAGATTGGTGTCTCGTTTTGTGAATGAGGCTGTTCTGTGTCTACAAGAGGGCATCCTTGCCAATCCAGTGGAGGGTGACATTGGGGCTGTGTTCGGTCTCGGCTTTCCACCCTGCCTTGGAGGTCCCTTCAGGTTTGTGGACCACTTCGGTGCAGACAAACTCGTGGAAAAAATGAGAAGGTTTGAGGAGGTCTTTGGGAACCAGTTTACTCCTTGTCAGCTGCTGCTCGATCACGCTAAGGATCCAAGCAAGAAATTTCACAAGTGACTTCAGCCGTTATGTGCCATTACGACTTCATAGAAGTTTCAGAGATTTACATGAAAAACAAGCAATCGATTGTGCACTTAAAGCAAGAGTTCAGAATGTGAAGGGCCTTTTTGTTCCTTGTTAAGGAAATAACAATTTTCCCCCGTAAGATGGCATGTGCTTGACTAATATAGACTTTGGCCAAGTGATAGCCTTTTACTGAATTAAACAATTTAGTTTTTGGGTTGTTTTTGTATATTAATGAACTCTTTAGGTGAAATTGTTTTCTAATGGTTGTGTACAAATAAA

Function

symbol description
hadhab Predicted to enable enoyl-CoA hydratase activity and long-chain-3-hydroxyacyl-CoA dehydrogenase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial fatty acid beta-oxidation multienzyme complex. Human ortholog(s) of this gene implicated in fatty liver disease and mitochondrial trifunctional protein deficiency. Orthologous to human HADHA (hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha).
hadha Predicted to enable enoyl-CoA hydratase activity and long-chain-3-hydroxyacyl-CoA dehydrogenase activity. Involved in cardiolipin acyl-chain remodeling. Located in mitochondrial nucleoid. Implicated in fatty liver disease and mitochondrial trifunctional protein deficiency. Biomarker of Alzheimer's disease.

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process

KEGG:

id description
K07515 HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_01419375_01443524.mRNA True 3958 mRNA 0.47 20 1419087 1443699

Neighbor

gene id symbol gene type direction distance location
CI01000062_01401358_01417189 TMEM62 coding downstream 1898 1400405 ~ 1417189 (-)
CI01000062_01361295_01382538 ELMSAN1B coding downstream 36316 1361295 ~ 1382771 (-)
CI01000062_01210373_01227487 MTA1 coding downstream 191600 1210060 ~ 1227487 (-)
CI01000062_01191296_01194695 TMEM229B coding downstream 224392 1190693 ~ 1194695 (-)
CI01000062_01131089_01166027 NA coding downstream 252480 1130865 ~ 1166607 (-)
CI01000062_01747676_01766964 IMPG1B coding upstream 303977 1747676 ~ 1766964 (-)
CI01000062_01787025_01788167 HTR1E, HTR1B coding upstream 343317 1787016 ~ 1788512 (-)
CI01000062_02087992_02119506 NA coding upstream 644272 2087971 ~ 2120066 (-)
CI01000062_02287961_02292055 NA coding upstream 843684 2287383 ~ 2292092 (-)
CI01000062_02400091_02406400 CMPK2 coding upstream 956055 2399754 ~ 2406400 (-)
G259516 NA non-coding downstream 78589 1332833 ~ 1340498 (-)
G259465 NA non-coding downstream 313177 1019507 ~ 1105910 (-)
CI01000062_00963254_00999381 PLEKHH1 non-coding downstream 408919 963206 ~ 999381 (-)
G259421 NA non-coding downstream 640107 778684 ~ 778980 (-)
G259419 NA non-coding downstream 657126 761758 ~ 761961 (-)
G259597 NA non-coding upstream 46231 1489930 ~ 1499660 (-)
G259598 NA non-coding upstream 61348 1505047 ~ 1510116 (-)
G259619 NA non-coding upstream 82326 1526025 ~ 1526401 (-)
G259630 NA non-coding upstream 86311 1530010 ~ 1530435 (-)
G259633 NA non-coding upstream 90746 1534445 ~ 1535935 (-)
CI01000062_00000216_00015634 EPRS other downstream 1403375 216 ~ 15712 (-)
G261400 NA other upstream 2501736 3945435 ~ 3957385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location