CI01000062_01747676_01766964 (IMPG1B)


Basic Information

Item Value
gene id CI01000062_01747676_01766964
gene name IMPG1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 1747676 ~ 1766964 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_01747676_01766964.mRNA
GAAATCCTGTCTTAGTGTGGTACAAGAGGACTTCTGTAAAGCAAGATTACTCATTTGGCTTTAAAAGTTATCGGCACAATGTTAAAAACAGAGAACTCGCTGCTGACGACTTGATTCTCAGGATCAGAAATGTGAAGTACAGGCACTTCCTGGAGACGCCACAGCCAATCAAACAGTTGACAGATGGCAGAGATTCACTTTCTCTAGATGTGCATCGAGCAAAGAGATCAGCGCTGTTTAGTACGGGGGTGAAAGTCTGTCCTCGGGAGAGCATGGCGGAGGTCATCACCAGCCATAAAGCCTACTACAAACTAAGAGTTTGTCAAGAAGCTGTGTGGGAGGCCTTCCGGATCTTTCTTGACAGAGTTCCTGACACCATGGAGTACCAGCAGTGGGTGTACACCTGTCAGAGAGACTCGCTTTGCATGGAGGATCTGGCCCGAAATTTTAGTAGCACACAGGAGCATCTTGACATGGTAGCCAGTAGAGTGGATTCTCAAGATGAACAGGAGAGGGCTCTCACACCTGCACCAGGCGAGAAATGTTCAAAGAGTCCTGCTGAGCTTTTCATCATGGAATCTGACAGCGAAACTGGGGCACCAGATGTTGTCCCTCAGAGGCTGGAGGAGCACATTGTGGAGTTCAGTGTGACTATAGTAGACCCCGTCTACAGCGCACTACTGAGGGATCCAGGCAGCCCTCAATATGAAGACCTCACTCGCAATCTTCACGAGCAGATGCTGCATGCGTTCAACAAACTTCCTGGGTTTAAAGAGATTCGAGTGCTGGGATTTCGAGCTGGAGGTGTTACAGCAAGCTTTGCTGTAGTGTTTGAGACTGATGGGACAAAGGCCATAGGTGACACAGACTCCACTGATGAATATGGCATAGAGGGAGTCCTAAAGGGCATGGTGGTCAAGGCGCTAAGTGAGGACGCATCACTTCCTGTGGACGTGCTTTCCCTAACTTTCGAACAAGCAGGCAAGCAGGAAAACACGAGATCCAGTACTGAAATCAGTAAAGAATCAAGGTTTTTACCTGGGGAAATGAGTACAGAGTCCACAAAAGCCAACTCGGAGGAATCTATAGCGCCTTCTGGAAGTGTGGGCATCTTTTTTGGAGAGCTAGGCCATGATAGGACTGAGGGTGAGGGGACAGAAAGGACTGTTATACATAAAGTACCTGATATATGGTCCCATGTTACAACACTACCAGCAGCCACAGAGGTAATCAGCCACTCCCAACTTGAGGGTTCTAAGACGACAAGTCTAATCACTGAAGACACTTTAGCTACCAAAGGTTCGCCAAGAACCACTACAGTGGATTACCTATCAAAGTTGTCTGAAGTCCAAGAGGATGTAGGAAATGAAACTGTTGCCACAGCTGCAACACTGGACTTGGAATCTTTTGAAGTAGCAAAAGCATCTACTTCAGCTCAACCTGAAATGGATTTTGATATGACACCAGAGGCCACTCTCGCAGAGGCAACATCATCAATCTTGACATCCCTAACCCCTACTGAACGAGCTCAAGATGCTGTATTGCAGGAAGATGACACAACTGGCCCCTCTGAACCTTTAGAGACCTCTACCGAAGGTCTTCCTTCATACCCTACCGGTCCAGTTGATAGCCCCGAGTTGCCCACTTCAATTGACCTTAGTGACCACATAGACTCTCCATCAGCCAGTGCCACCGTAGACACACTCCATCAAAAGGAGCCTCCTGTTGGACCTACCACTCCAGAACCAATTCTCCCTGCCGCAATTCCCTCTGAGCTAACGCCCACAGAAGACCTTATTTCACACCTGACCCCAGACAATTTCCTCGAGGAAAAGGGACAGACTCTCTGGACAGTTTCACCTCCCCCACATGAAGGTAGAACAGATAATGATAGAGACACACAAGACGACGTAGAACAGTCTGATGAGGAGGACGAGAATCTGGACTCTGGGAGTGGATTCCCCTCGGAGATCGACGAGAATCCACAATCCTCGGCTCATCCTATAGGTTACGTTACCACTCCTTCGATGTTGGCTTCTAACCAGGCCAAAGAGTTAGTGGTGTTTTTTAGTTTACGTGTGACTAATATGATGTTTTCGGAGGATCTTTTCAACAAGAGTTCCCCCGAGTACAAATCACTGGAGAACACGTTTCTTGAACTGAGACAGTTCTCTGAACCAAGTGACTCGGCAAACCCTGAGGCCTCTAGTCATGTGACTGAGAGAGAACAGAAGACATTAGCCTCAATACCGCTCCTGCCGTATCTACAGTCCAACCTGACTGGATTTAAGGAGCTGGAGATTCTGAACTTTAAGAATGGCAGTGTGGTGGTAAACAGCAAGATGAAACTAAACAAACCGGTTCCATACAATGTTACGGAGAGGGTGCAGTGCGTGCTTGAGGACTTCTGCAATGCGGCGTCTAAGAGACTGAACATGGAAATTGACTCCCAATCAGTGGATGTGGAAGCAGCCGATCACGTCGATCCATGTAAGTTTATGGGGTGTAACGAGTTCTCCCGCTGCGTGGTGAACACGTTAACCACAGAGCCCGAGTGTCTGTGTGATCCGGGCTACAGCACAGAGGACGGCCAGCCCTGTACGAGCATCTGTGACCTACAGCCTGAATACTGCCTGAACGGAGGCCAGTGTGAAATTATACCAGGACACGGAGCGACCTGCAGATGTCCTGTAGGTAAATTCTGGCACTACCACGGAGAACGCTGCAACGAATTGGTGTCTATGCCCATTGACCCTCTCCTTTTCGTAGCCTGCCTGGTGGGAAGCCTCTCGGTGGTTTGTGCTGTGATAGGCATCTTGATTTTCATTAACAAGAAATGTATACGGACCAGAAAGACCATGAGACTTGTGCGTTCACAATCTGCATTCCCTTTTGGTAATACTATGAGAGTAAATCCAGTTTTTGAGAATGACGATGGGGTCTTAACACATGTGTCGAGCATCCTCTGTCCCATGAGCTCTGACTCAGCCTCCTTACAACAGTCAGGCCAAGGCACATTTCGATCACGAGAAAGTACACAACTTAGTATTGAG

Function

symbol description
impg1b Predicted to enable heparin binding activity. Predicted to act upstream of or within visual perception. Predicted to be located in several cellular components, including cell projection; extracellular region; and interphotoreceptor matrix. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in vitelliform macular dystrophy. Orthologous to human IMPG1 (interphotoreceptor matrix proteoglycan 1).

NR:

description
Interphotoreceptor matrix proteoglycan 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19016 IMPG1, SPACR; interphotoreceptor matrix proteoglycan 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_01747676_01766964.mRNA True 3053 mRNA 0.48 16 1747676 1766964

Neighbor

gene id symbol gene type direction distance location
CI01000062_01419375_01443524 HADHA, HADHAB coding downstream 303977 1419087 ~ 1443699 (-)
CI01000062_01401358_01417189 TMEM62 coding downstream 330487 1400405 ~ 1417189 (-)
CI01000062_01361295_01382538 ELMSAN1B coding downstream 364905 1361295 ~ 1382771 (-)
CI01000062_01210373_01227487 MTA1 coding downstream 520189 1210060 ~ 1227487 (-)
CI01000062_01191296_01194695 TMEM229B coding downstream 552981 1190693 ~ 1194695 (-)
CI01000062_01787025_01788167 HTR1E, HTR1B coding upstream 20052 1787016 ~ 1788512 (-)
CI01000062_02087992_02119506 NA coding upstream 321007 2087971 ~ 2120066 (-)
CI01000062_02287961_02292055 NA coding upstream 520419 2287383 ~ 2292092 (-)
CI01000062_02400091_02406400 CMPK2 coding upstream 632790 2399754 ~ 2406400 (-)
CI01000062_02473721_02477346 IAH1 coding upstream 706570 2473534 ~ 2477346 (-)
G259705 NA non-coding downstream 9411 1737471 ~ 1738265 (-)
G259675 NA non-coding downstream 99219 1648257 ~ 1648457 (-)
G259626 NA non-coding downstream 157757 1577744 ~ 1589919 (-)
G259635 NA non-coding downstream 198979 1548495 ~ 1548697 (-)
G259632 NA non-coding downstream 202617 1541102 ~ 1545059 (-)
G259725 NA non-coding upstream 25322 1792286 ~ 1792555 (-)
G259737 NA non-coding upstream 50845 1817809 ~ 1818152 (-)
G259745 NA non-coding upstream 67095 1834059 ~ 1834290 (-)
G259747 NA non-coding upstream 70748 1837712 ~ 1837921 (-)
G259750 NA non-coding upstream 72629 1839593 ~ 1839892 (-)
CI01000062_00000216_00015634 EPRS other downstream 1731964 216 ~ 15712 (-)
G261400 NA other upstream 2178471 3945435 ~ 3957385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011594 impg1b coding NC_007128.7 CM002901.2 36627099 ~ 36681740 (+)