CI01000062_01787025_01788167 (HTR1E, HTR1B)


Basic Information

Item Value
gene id CI01000062_01787025_01788167
gene name HTR1E, HTR1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 1787016 ~ 1788512 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_01787025_01788167.mRNA
AGTGAAACCTAAGAAAAATTGCCGCCGCTTGCAGGCAAACTGTCAACCTTTTAAAGATGACTCGTGTGTGGACGTGAAGCAAGAGGAGCACTGAAGAGGATGTTCTTCCACAACTTCTGGGATGCTTTATATTGCGCAGCTTTGCAACTGTTATGTTCGAAGCTGGTTTTTATTTTTCTTAGAGAGCGAAGTTTGAGATTTAGAATGAAGCAGAAAGACATGTCATGTCACAGAACAAACACATCAACGAGCGTCTGTCTGCACCTGATGATAGAGCTGACAGAAATCATGAAGCGGAGAAAATATTGCTTTATTTTCAAAATATGAAAACACTAGTCTTCTGGGATGGAGCGCAGCGGTCATTTCAAGCCGACACCTGCCCAGTTCGAGGTTTTGAACAGCTCGACCGGCACCAATGTGACTTTAACACCTAAAACGGACGAAAAACAAGAAAGTTTCGCTTTCCAAGTCACCTTGGCATCAGTTCTCGGTCTCATCACTCTTGCAACGATATTAAGTAATGCATTTGTCATCGCCACCATTTCCCAATCCAGAAAGCTCCAGACACCGGCGAACTTCTTGATCGCGTCCCTGGCCGTAACGGACCTCCTGGTGTCGGTGCTCGTGATGCCCATTTGCGTGCTGTACACGGTCACTCACGAGTGGACGCTCGGGCAGGTTATGTGTGACATCTGGCTGTCCTCAGATATAACCTGTTGCACCGCGTCCATACTTCACCTGTGCATAATCGCCTTGGATCGATACTGGGCTATAACGGACGCGGTCGAGTACGCCAAGAAACGCACCCAAACGCGCGCCGCGGGTATGGTGGCGACCGCCTGGATCATCGCCATCTCCATCTCCCTTCCGCCTTTCTTTTGGCGACAGGTGAAGGCAGGGGAGCTGACCAACTGCTCGGTCAACACGGACCACATCTTCTACACCATCTACTCCACTTTCGGAGCTTTCTACATCCCTACGCTGTTGCTCATCGCCCTGTACGGGCGGATTTACGTGGAGGCGAGGAAGCGCATTTTGAAACAGTCTCCCAAAAAAGCGGGGAAAAGACTCACTTCGGCACATCTGAGCACTAATTCACCCGCTTCGGTGGCTTCGACCTCTCCTTTGCATAGTGGAAGGCATGACCTTTGCTCGGACACCGCGTCTCTGGGCAGTGACAATCAAATTAGAGTAACTGTGTCCGATTCACTTCTGGAGAAAAAAAGAATATCGGCTGCGCGCGAGAGGAAAGCCACCAAAACCCTGGGCGTTATTTTAGGAGCCTATATTGTGTGCTGGTTGCCGTTTTTCATTTACACACTGCTGGTTCCCCTCTGTGAATCGTGCTTTTCCGCAGAACTCTTTAACTTTTTCACATGGCTTGGCTACGTCAACTCACTGATCAATCCAATAATATACACCATGTCGAATGACGACTTTAAGAAAGCTTTTCACAAACTCATAAGCTTTAGATGTTGCAGACGATAGTAAAATAAA

Function

symbol description
htr1b Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within several processes, including G protein-coupled receptor signaling pathway; bone remodeling; and vasoconstriction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in central nervous system; pharynx; and retina. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder and conduct disorder. Orthologous to human HTR1B (5-hydroxytryptamine receptor 1B).
htr1e Enables G protein-coupled serotonin receptor activity and serotonin binding activity. Involved in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway. Is integral component of plasma membrane.

GO:

id name namespace
GO:0007631 feeding behavior biological_process

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_01787025_01788167.mRNA True 1497 mRNA 0.48 1 1787016 1788512

Neighbor

gene id symbol gene type direction distance location
CI01000062_01747676_01766964 IMPG1B coding downstream 20052 1747676 ~ 1766964 (-)
CI01000062_01419375_01443524 HADHA, HADHAB coding downstream 343317 1419087 ~ 1443699 (-)
CI01000062_01401358_01417189 TMEM62 coding downstream 369827 1400405 ~ 1417189 (-)
CI01000062_01361295_01382538 ELMSAN1B coding downstream 404245 1361295 ~ 1382771 (-)
CI01000062_01210373_01227487 MTA1 coding downstream 559529 1210060 ~ 1227487 (-)
CI01000062_02087992_02119506 NA coding upstream 299459 2087971 ~ 2120066 (-)
CI01000062_02287961_02292055 NA coding upstream 498871 2287383 ~ 2292092 (-)
CI01000062_02400091_02406400 CMPK2 coding upstream 611242 2399754 ~ 2406400 (-)
CI01000062_02473721_02477346 IAH1 coding upstream 685022 2473534 ~ 2477346 (-)
CI01000062_02488009_02560794 ASAP2A, ASAP2, ASAP3 coding upstream 699297 2487809 ~ 2562434 (-)
G259705 NA non-coding downstream 48751 1737471 ~ 1738265 (-)
G259675 NA non-coding downstream 138559 1648257 ~ 1648457 (-)
G259626 NA non-coding downstream 197097 1577744 ~ 1589919 (-)
G259635 NA non-coding downstream 238319 1548495 ~ 1548697 (-)
G259632 NA non-coding downstream 241957 1541102 ~ 1545059 (-)
G259725 NA non-coding upstream 3774 1792286 ~ 1792555 (-)
G259737 NA non-coding upstream 29297 1817809 ~ 1818152 (-)
G259745 NA non-coding upstream 45547 1834059 ~ 1834290 (-)
G259747 NA non-coding upstream 49200 1837712 ~ 1837921 (-)
G259750 NA non-coding upstream 51081 1839593 ~ 1839892 (-)
CI01000062_00000216_00015634 EPRS other downstream 1771304 216 ~ 15712 (-)
G261400 NA other upstream 2156923 3945435 ~ 3957385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011592 htr1b coding NC_007128.7 CM002901.2 36588281 ~ 36589605 (+)
bowfin (Amia calva) AMCG00003597 htr1b,LOC103360562 coding CM030121.1 CM030121.1 11249087 ~ 11250247 (-)