CI01000062_02400091_02406400 (CMPK2)


Basic Information

Item Value
gene id CI01000062_02400091_02406400
gene name CMPK2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 2399754 ~ 2406400 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_02400091_02406400.mRNA
ATGCTAAGGAGAGCAATGTTTCGTTGTGGACAGCTGTGTTCGGTGGAGTTTGACTTGCGCGCTGAACCTCTTTATTTCACACTGAGTTCAAGCCCACAAGTTCTTCATCATGCTCATCAACAGCTCTTTGAAGACCGTGGGAAACTCTTCTCGCTACATGTCCAATGTGAGAACAGAATTGAGAAAGCGCAAACGCACGCAGAAATAAAACACAAGCTGTCTTCAACACTCTCGCGAGATTGCGATGTATTTGAAGCGTCTTCTTTTAGTCCGAACGTCGAAAATAGCGTCGTTAAAGGGTTTTTTATACGAGACAAATCCACTACAACACTTTCAGAGGACGTATTAAACACATTACGGCAGAGTAAAAGAGTATGTGTGTTTTCATACAAGCGCGAGGGTCAGTACTGCTGGCAGGAGCTGTGGTCACCTGTCAATCAAGTGGAGGGGTCAGAGAGACAGTACATCACACCTGCAGCAGCAGCAGAGCATCATCCATCCACACTGAACATCAGGAACTCCGATGTCTTCTACAGTATGGATGAAGCCTATAAGGTTCTTCAGGAGTGCACTGACATTATCCCTGAGTCAAAGGAAGTGCTGAAGCTCGTAGACGAACAGTTGGAGACAATCAGGGGTGATGGATTTCCTGTCATTGTGATCGAGGGACTGGATGCTACAGGTAAAACTACTCTCACAGAAGCCCTGCGGGAGTCTCTGAATGCCACTCTGCTGAAATCTCCTCCCCAGTGTCTGGCTCCTTTCAGACAGCGCTTTGACTCAGAACCACCCCTCATCCGCAGGGCCTTTTACGCTCTGGGGAACTACATCACTGCAGCCCACATTGGAAAAGAATCCTTAAGGGCTCCTGTCATAGTGGACAGGTATTGGCACAGCACAGCAGCATATGCCATTGCCACAGCAGTCAGTGGGAGGGTTGAAAACCTCCCTAGGCCAGGCTCAGAGCTCTACCAGTGGCCAGAAGACCTGCTCCAACCAAACCTGGTGCTGCTTCTCACTGTCAATCCAGAAGAAAGACTGAGAAGACTCAGGGACAGGGGACAGGACAAGACCGTTGAGGAGGCTGAGCTAGAGATCAATCAGTTCTTCCGACTTAAAGTGGAGGAAGCTTACAAGAGAATCCAGAATCCCGCCTGCATCATCGTGGATGCAAGCCCCTCTCCACAAGAAGTGCTGCAACAAAGCTTTAGTGATGACACGAGAGGGAAAGTTATTGCGGGTGCTGTAGCTGGATGTCAGCTCTCATACGCAGGGTCACAGCGTCCACTTTCCTCACTCTGACTTATTCCCAGTGAAACACAGGAACTCAGCTAAAGAGGTTTGAGAATTCATCAATCACTTCAATTAGATTTAAACACAAGAACTCATTGTTGGTCAGCTCGGTATTCACTCCTATAGGAGATGGAATCAAGGGACCTTATGGAGGTATTAAAAGCAATACATCTGATCCAAGCAATTTAAACTTGCTTTGATTTGTTGCTGTTGCTTTTGGACGCAGAGTCTGATCATTAATTAAGAGTGATATGCTAGGGCTAAAATGTACATGTATATAACTCAGTTTTTAGTTCCAGAGTCCTTAAAGCCTGTTTATTGTATTGTATTGTATCATAAGAATAAA

Function

symbol description
cmpk2 Predicted to enable nucleobase-containing compound kinase activity. Predicted to be involved in dTDP biosynthetic process; dTTP biosynthetic process; and dUDP biosynthetic process. Predicted to be active in mitochondrion. Is expressed in brain; integument; liver; muscle; and pleuroperitoneal region. Orthologous to human CMPK2 (cytidine/uridine monophosphate kinase 2).

GO: NA

KEGG:

id description
K13809 CMPK2; UMP-CMP kinase 2, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_02400091_02406400.mRNA True 1639 mRNA 0.46 6 2399754 2406400

Neighbor

gene id symbol gene type direction distance location
CI01000062_02287961_02292055 NA coding downstream 107662 2287383 ~ 2292092 (-)
CI01000062_02087992_02119506 NA coding downstream 279688 2087971 ~ 2120066 (-)
CI01000062_01787025_01788167 HTR1E, HTR1B coding downstream 611242 1787016 ~ 1788512 (-)
CI01000062_01747676_01766964 IMPG1B coding downstream 632790 1747676 ~ 1766964 (-)
CI01000062_01419375_01443524 HADHA, HADHAB coding downstream 956055 1419087 ~ 1443699 (-)
CI01000062_02473721_02477346 IAH1 coding upstream 67134 2473534 ~ 2477346 (-)
CI01000062_02488009_02560794 ASAP2A, ASAP2, ASAP3 coding upstream 81409 2487809 ~ 2562434 (-)
CI01000062_02724898_02725662 ID2A, ID2 coding upstream 317579 2723979 ~ 2726153 (-)
CI01000062_03024898_03029604 EIF2S1A, EIF2S1B, EIF2S1 coding upstream 618479 3024879 ~ 3029696 (-)
CI01000062_03033192_03047656 MPP5A, MPP5 coding upstream 626247 3032647 ~ 3047847 (-)
G260209 NA non-coding downstream 12176 2387246 ~ 2387578 (-)
G260207 NA non-coding downstream 14628 2384754 ~ 2385126 (-)
G260202 NA non-coding downstream 22071 2377209 ~ 2377683 (-)
G260201 NA non-coding downstream 26962 2372577 ~ 2372792 (-)
G260200 NA non-coding downstream 27510 2371936 ~ 2372244 (-)
G260160 NA non-coding upstream 628 2407028 ~ 2410972 (-)
G260167 NA non-coding upstream 76699 2483099 ~ 2484159 (-)
G260245 NA non-coding upstream 156210 2562610 ~ 2562810 (-)
G260361 NA non-coding upstream 399705 2806105 ~ 2806309 (-)
G260383 NA non-coding upstream 456094 2862494 ~ 2880532 (-)
CI01000062_00000216_00015634 EPRS other downstream 2384042 216 ~ 15712 (-)
G261400 NA other upstream 1539035 3945435 ~ 3957385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011588 cmpk2 coding NC_007128.7 CM002901.2 35362851 ~ 35375448 (+)