CI01000062_03436291_03454196 (RIN3)


Basic Information

Item Value
gene id CI01000062_03436291_03454196
gene name RIN3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3435437 ~ 3454558 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_03436291_03454196.mRNA
AGAGTGTAGTGTGTTAGTGTTTGAGGTTTATTTAGAGTTCAACTGTGTGTGAGAGTGTAGAGGGGTGGTAAGGGGTTGGCTGACCACCCTGGACAGCCCCTTCCTGACTACATTGCTGACAGGAAGTTTAGAAAGAAAAAGAAAAAAGGGGACGTTAATTTTTTCTGTTTCTTCTTCTTAGTTTTTCTGCATTTTAATGATTTTGCCTTCCCTCGTTCGCAAAAGGAATACGCACCAAAGAGAAAAACACAAAGTGAAAGAGTGAAGAGAATATGGAGGACAGCTTTTGCTGTACATTGAGTCATTCTGTGAGGGATTATTTGTGACGCCAAAGGAAGAATGTTGAGTGTGAAGACTGAATGATGAAAACAGCTGTTGGGACTCAGAACACGGAGCATCCTGAGATATGCACTATGCTTTCTCCTGGCCCTTCCACAGCACCTCCAAGCCTCTCCAAACCCACTTCCCCACCCATATCTTCACCTATTCAGGCATCTTTCCATTCACAAACCTCTCCTCTTCCTCCTAGTTCTCCTTCTTCTTCCTTGACTTCTACTTCAGCCTTCCCATTGGTTGATATATCTGACACTGACACTGCCTCCCTTCCGCTCCCTACTTCACCCCCAATTTCATGTGTACGGCCTTCCTCACCTCAGCTTAACTCCAAACCATCCCTACCTCCTCCCCACAAACCCATGTCTCCCCAGTCCTCAAAGCCACCTCTCCCAGCACAACTTCCCTCTGCTCTTCCTAAGAGCTCCTCCTCAGCCCAGCCTAGACCACCTCCACCTCCTGCTACAAGGCCCTCATCTCCACCTCAACCCAGACCACCTCCACCAGTAGGCTCAAAACCTCCAGTCCCCACATCTCCAGTGAGCAAGTCCAGTAAACCTGTTCCTCCTGGTATCAGCATCCTGGAGAAACTGATTAAGACATGTCCAGTGTGGCTTCAACTGGGAATGAAGCAGGACAGAGCCATGCATATATTGAGCAAGGAGTTTCCTGGGATCTTTTTAGTCAGGAGGGATGCAAGTCAAAAAACGATGATACTGGCAGTACGTCTTCCTGACCAGCTGGGGGAGCCCCATGTCAAGGAACTGCCTATAAAAGAAGAAAAATCCTTGCTGTACCTTGAAGGGTCTGTGCTGGTGTTTGAGAACATTTTTAAACTCATTGCTTTCTACTGTGTTAGCCGGGACATCCTCCCTTTTCCTCTGAAGTTACCTCAGGTAATTCAAAAGGTAGAGAAATATGAGGACATGGAGGTGATCTCATCTCTAGGTTCAGAGTTCTGGAACTCAGCTCTGAATAGTCATGAGGAAGTGGAAAACGTTGCTGGTAGCTGTGGTGCTTCGGATGGACAGGGGCAAAGCAGCTCCTGTGAAATCCAGCTTTCCATTGGCAGTGACCGGCTTTGGTATGTCAACCCAATTTTCATTGAGGAATGCAGCAACAGCTCATCACCCACCTCCTCTACCCCTGTTCTGAGGACCCAGAGTCTCAACGCACCAATACAGGCTCCGCCCAAATACAAAAGGCCGCCACCCCTACGCCCTCGTCCTCCCAGTTCACCTGAGTGCTCTTTAAACTATGCATTGGCCAAGCCTTTAAAAGGGGAGTTTAAGTCTGTTCTCAGTTCTCCTCCCCCTTCAGGCCAGAAAGGGGAAGGAAGTGACTCTGAGTGTGTAGACAGAGAACAAGAGAGACAGGGAACTCCTGCCCCAAGCACTGAGCGTGAAAAGCCAGCTGTCTTACAACCAGCTCAGGGCAAAGAAGGAAAGCAGCTTTCTAATACAGCTTCACATCGAGTTCCTCCAATTCCAATCCGACGGAGGTTATCTGAAAAGCAAGCTTCAGAGGAGCCAACGCAGAAGGAAGTCCGCACCAGTACCTCCATAGAAGCAAAGGACGATTTTCCACAAGTCCCTGTAGCATCTCTCATTTGCCTAGATGACAGTATAGAAGAAAGGGACAAGCCTATGGAGCCAGATACTCAGCAACTTCAAGAGGTGCCAGTGGAAGAGCCTAAGGTAACTAATGGAGCTCCAATGGTGACTCGAGAGGTAGCACCTCAACCAAAACGGCCCAGTGCTCCAGTGGCACCTCCCAGGAAGAAAAGACTGTCTCAGAATCTGACGGGACAAGTCTCCCAAAGCTTTGGAAACTCACTTGCGCCAATTCCCCAAGAGCCCACTTCCATTGTTACTTTGAACTCCAGCAGCCCCAATCCTGTCCGCCACTCGCTCTGCATCAACGCTGGTCATCAAAAAGTCTCAGATGTTTCTTTATACTCACCTGAAGGTGGAGCTCCACCAGACCATGACTCCTACTCAACAAGTAGCACAGAAGAGGAGGCGGATTCCAGTGTGTCAACAAGTGCTGTGATGAAGAGGTCCCCAACAATTATGCTAGACCGCGCCAAGCAACGACTGTCAATGGTGTCCATGGCGAACCTCTCTAATGTCCTCACAGGCTTCATGAATGCGGACCGCAAGTTGCAGAAACGCATCGTCGAACTGTCCCGGGATGGTAACACGTACTTTGGGAACCTTGTTAAGGATTATCGAACTTTCACTTTGGACACCATGCGGAAACACACCTCCAGCACAGAGATGCTCCAAGAGATCAGGCAGATGATAACCCAACTGAAAAGCTACTTGATCCAGAGTGCAGAGTTGCAAAATCTACAGGAAGCAGTTGCATACTCTGAGGAGAAACTGGAGATCATTATTGAAGCAGCACTATGCAAAAGTGTCCTGAAACCCTTGCGGGAGGCTGTGTATAATGGACTGAAGGATATCCACTCCCGTGCAGGAAATCTGAAGAAATTAAAAGAGAACCAGCAAGTGGTTCAGGGGACCACCACCACAGACCTGGGGGTCATTACAAGTGTTCCTGAAAACGCCGTCATGGAGAAAATTCAAACAAAGCTCAGTAACCTACACCAAGAATATTCACCTCAGAAGAAGATCGACCTCCTCCTCAAGACCTGCAAAATGATCTACGAATCCATGTCTGTGGGCAGTCCAGGAAAGGTTCACGGGGCTGATGACTTCCTGCCTGTGCTGATGTACGTCTTGGCTCGCTGTAACATCAGCGCTCTGCTGCTGGATGTAGAGTATATGATGGAGCTAATGGATCCGGCATTGCAGCTCGGAGAGGGTTCATATTATCTCACCACCACTTATGGAGCTCTGGAGCACATCAAAAATTTTGATAAACAAGCTGTGACCAGACAGCTAAGTTTGGAGATCCAGGACTCCATCCATCGTTGGGAGCGTCGCCGCACCCTAAACAAAGCCAGAGCGTCACGCTCCTCTGTACAGGACTTCATTAACGTGTCCTTTCTGGAGGCCGGCTCCAACACCAAGACCCTGGGAGCACGTCCCAACACTACCGCTCAGGACTTGTGCAATCAGTGTGCAGAGAAATTTGAGGTATTGGATCCTGAATCCTACTGCCTAAGTGTGCTAGTGGAAGGCCATTACAAGCATTTGGCTCCTGAAGATTCTCCTCTCACGATAAAATCCACCTTGCACCACAGTGAGCCACGCAAAGAGTATTATTTCGTCTACCGCCATGGTCGTTGGCCAGAACAAGAGTCTGTGGACCAGACACCAACTACACCAGCAACAGAAGAGAATTTGATATGAACTACTGAGTTGGTGTGCGTGTGTGGGGGGGTCTTTAGCAGAGGGTTTGAGATGCTTGAATGGACAACTTTAATATACGAAAGAATGTAAGTGATGTTCAAGAATGTAAACTGAAATTACAATGCCTAACCACATAGCAGAATGTGCTATTTGCCGAGGGAAATTGCATGAATTCAAAGACTGCCTTTCAGGTGAGTGGCATTTGCTTTAAAACGCTTCCTGGAAAGGTCCAGGACTGGAATCCGAAAACTGTTTTGAAAAGATCTAATTTTTTTCTCCTAAAGGCGCATGGTGAGCCTCACATGAAGAGCTTGCATCATAAAAACATTCATTTTTTGAGACTCAATAATATCAGCAAACACACAACAGATACATCCTTCACCTTAGTTAGCCTTTACTTCAGCAGATCTGATGTTCTCAAGCAATATACAGTCCTTGAAAGTTTCACAATTTATAAATTAAACTTAACTTTCCAACAATGCAAATCCTTTCACATCTCAGGGCTCAGCAGATTGTGACTCATACCCTGTTTCGGTGCTGATTTCTTCATTTATACGTTTCTTAAAGCAATGCATCTTTACAGACCTTGAACTGGTTATGCACCTGCATTGCTTTTATATTATATACTCAGTAATTTGCCATACAGATATGCTTTCCGTGTTATATTTTCTTCATATTTGGTTCATTGTTGCTGCATTTTATATCTCATAACATATACAGTAGTTTAGACATAAGCTCTGACTTTGTGCAAATTATTTTAAGCAGCATGAATATCACCCAATATGTGTTTCAGTGAGCACAACACTTGTCAAACCAAGGTGTTTGTTATATTATAAATGTATACTGGTAATAAA

Function

symbol description
rin3 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human RIN3 (Ras and Rab interactor 3).

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_03436291_03454196.mRNA True 4507 mRNA 0.46 10 3435437 3454558

Neighbor

gene id symbol gene type direction distance location
CI01000062_03428921_03431581 NA coding downstream 3856 3428921 ~ 3431581 (-)
CI01000062_03211594_03253336 FUT8A, FUT8 coding downstream 181810 3210581 ~ 3253631 (-)
CI01000062_03067891_03127934 GPHNA, GPHNB, GPHN coding downstream 307503 3067606 ~ 3127934 (-)
CI01000062_03033192_03047656 MPP5A, MPP5 coding downstream 387590 3032647 ~ 3047847 (-)
CI01000062_03024898_03029604 EIF2S1A, EIF2S1B, EIF2S1 coding downstream 405741 3024879 ~ 3029696 (-)
CI01000062_03470252_03479300 SNAP23.1 coding upstream 15543 3470101 ~ 3479300 (-)
CI01000062_03500344_03507001 NA coding upstream 45369 3499927 ~ 3507331 (-)
CI01000062_03511363_03532823 XDH coding upstream 56798 3511356 ~ 3532823 (-)
CI01000062_03536428_03550126 NA coding upstream 80841 3535399 ~ 3550536 (-)
CI01000062_03556433_03560289 DNAJC27, DNAJC27.S, DNAJC27.L coding upstream 101645 3556203 ~ 3561013 (-)
G261187 NA non-coding downstream 55711 3379497 ~ 3379726 (-)
G261186 NA non-coding downstream 73520 3361710 ~ 3361917 (-)
G261183 NA non-coding downstream 83259 3351948 ~ 3352178 (-)
G261182 NA non-coding downstream 84083 3351143 ~ 3351354 (-)
G261174 NA non-coding downstream 105164 3329200 ~ 3330273 (-)
G261220 NA non-coding upstream 28546 3483104 ~ 3484180 (-)
G261222 NA non-coding upstream 30102 3484660 ~ 3487235 (-)
G261226 NA non-coding upstream 36005 3490563 ~ 3490780 (-)
G261208 NA non-coding upstream 47358 3501916 ~ 3555072 (-)
CI01000062_00000216_00015634 EPRS other downstream 3419725 216 ~ 15712 (-)
G261400 NA other upstream 490877 3945435 ~ 3957385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011575 rin3 coding NC_007128.7 CM002901.2 33453689 ~ 33486030 (+)