CI01000062_03470252_03479300 (SNAP23.1)


Basic Information

Item Value
gene id CI01000062_03470252_03479300
gene name SNAP23.1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3470101 ~ 3479300 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_03470252_03479300.mRNA
GAATTTCGGAAAGTTTGGACTAGCACAGACACTTTCTAAACACTTACACCGATCGATCCTCAGTCTTATCCGTCTCCTGTCCTGGAAATTACCTCAACCCCAGAGCGTAGAGCTTAAGGCCACAGGAGGGGCGGCAAACTTGGACAGCAGCAAGATGGCAGACATGTCAGTGGAGGACATCACAATGAGAGCCAATCAAGTTACAGATGAGTCACTTGAAAGCACTAGGCGGATGCTCCAGATGGCAGAGGAGAGCCGGGAGACAGGGGTCAAAACAATGACCATGCTGGATGAGCAGGGAGAGCAACTGAGGCGAGTTGATCAAGGAATGGATCAGATCAATCAGGACATGAGGCAGGCTGAGAAGAACCTGACTGATTTGTCCAAATGCTGTGGCTTGTGTGTGTGCCCATGTGACAGAGTGTCTTCCATTGAGCATGATGGGAGATATAAGCGGACTTGGGGCACAGGCAGTGACAACTCAGGCACGCAGGAAAAAGAGGGTGGTGTGGTATCCAGCCAACCGACCGCCATTCGCAATGGGCAGGCTGTTTCGGGTGGGTCAGCGGGAGCCTCCGGCCCCTACATCAAGAAGATAACGAATGATGCACGAGAAGATGAGATGGAGGAGAATCTGGAGCAGGTGGGCAGCATCATCGGGAATCTCAAGAATCTGGCCATGGACATGGGCAATGAGATCGACAAACAGAACAAGACCATTGACCGCATCACTGATAAGTCTGTAATGGATGGTGCGGCTTTGCTCACTGCTGTCCTGTCAGTCTGTAATGGATGGAGTCTGATCTCTCTGGATGGTGATGGGCTTTGTCCATCCTTCTCTCTGGACTTGAAGACTTACGACAGAACCTTTAATGTCCTTGTATACTGCCCTTATAGCCGTTTATGTGTTTGGGCTAATTATATGTTTGGTTTTTATGTCATTTTTTTCCCCTGTTTAGCTGGTTTTGTGACTGATTATACTCATATTTAATTATCGTAAGACATTAAAGGGCCTTGTGAATACAGTTAGCCTTGTTCAATGTTTTGGGTAAAATGTATGGTAGTGTCTTTTTTTAATGGCATAATTTACCATGCTATATAGGACTAGGACATTTCACTATATCTTTTTTATTTCTAATAAA

Function

symbol description
snap23.1 Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to be located in neuron projection and synapse. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human SNAP23 (synaptosome associated protein 23).

GO:

id name namespace
GO:0016082 synaptic vesicle priming biological_process

KEGG:

id description
K08508 SNAP23; synaptosomal-associated protein 23

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_03470252_03479300.mRNA False 1142 mRNA 0.46 8 3470101 3479300

Neighbor

gene id symbol gene type direction distance location
CI01000062_03436291_03454196 RIN3 coding downstream 15543 3435437 ~ 3454558 (-)
CI01000062_03428921_03431581 NA coding downstream 38520 3428921 ~ 3431581 (-)
CI01000062_03211594_03253336 FUT8A, FUT8 coding downstream 216474 3210581 ~ 3253631 (-)
CI01000062_03067891_03127934 GPHNA, GPHNB, GPHN coding downstream 342167 3067606 ~ 3127934 (-)
CI01000062_03033192_03047656 MPP5A, MPP5 coding downstream 422254 3032647 ~ 3047847 (-)
CI01000062_03500344_03507001 NA coding upstream 20627 3499927 ~ 3507331 (-)
CI01000062_03511363_03532823 XDH coding upstream 32056 3511356 ~ 3532823 (-)
CI01000062_03536428_03550126 NA coding upstream 56099 3535399 ~ 3550536 (-)
CI01000062_03556433_03560289 DNAJC27, DNAJC27.S, DNAJC27.L coding upstream 76903 3556203 ~ 3561013 (-)
CI01000062_03601436_03604051 POMCA coding upstream 121994 3601294 ~ 3604343 (-)
G261187 NA non-coding downstream 90375 3379497 ~ 3379726 (-)
G261186 NA non-coding downstream 108184 3361710 ~ 3361917 (-)
G261183 NA non-coding downstream 117923 3351948 ~ 3352178 (-)
G261182 NA non-coding downstream 118747 3351143 ~ 3351354 (-)
G261174 NA non-coding downstream 139828 3329200 ~ 3330273 (-)
G261220 NA non-coding upstream 3804 3483104 ~ 3484180 (-)
G261222 NA non-coding upstream 5360 3484660 ~ 3487235 (-)
G261226 NA non-coding upstream 11263 3490563 ~ 3490780 (-)
G261208 NA non-coding upstream 22616 3501916 ~ 3555072 (-)
G261204 NA non-coding upstream 96613 3575913 ~ 3577974 (-)
CI01000062_00000216_00015634 EPRS other downstream 3454389 216 ~ 15712 (-)
G261400 NA other upstream 466135 3945435 ~ 3957385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000056 NA coding CM030141.1 CM030141.1 1361377 ~ 1383054 (+)