CI01000062_03556433_03560289 (DNAJC27, DNAJC27.S, DNAJC27.L)


Basic Information

Item Value
gene id CI01000062_03556433_03560289
gene name DNAJC27, DNAJC27.S, DNAJC27.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3556203 ~ 3561013 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_03556433_03560289.mRNA
AGTATGTGTGCATTCTTTCCATTTACATATTTTGGTTAAATATGCCACTCTCTTGCGCTAGTGTTCAAAAAACCTAGCAAATCGCGGCGAGTAGTCGAAAACCACTCGGACCGATTCACTCCTATTCATGAACGACTGGTTCTGTCCGCTTTTTTGAGCTGGTTCAATTTATTCATTGGGAAGATCCGGTTCAAAGTAACGATTCGTTCACGATTGGGTCCCCTTTGACGAATCTGTGTTATAGGTTTGCTGTCGCCATAGAAACCGTTCATCTGTTTGCTATAATTTGCCCTTATGTTTTCATTGTACATATTATCATAATGTCCATTAACCTCTTTATGAAATATATCATTTAAAAGGCTGTTTTAAAACTATATATTTAGATCTTTATATTTATAGCACAAGGCTCTGTTGAATCTGTTGTTTTCAATCGTTTGACCAAATAGACGTTGCTAGGGCATCTAGCCCGTTAGCATGTCGAGTTTTAAATAATTCTAACGTTACCTGCAAAAATATTTGCGGTTTTTGTCGGCGGCAAATCATGTGTGAAATGTATTTACGATTTATGGACAAATGTTATCCATAATATTTCGTGACACACTGGCTCACTGTTAGCCATATAGCAGGCTGCTCACTGTGTTGACGGACCGACTCAAACAATCATACGCGAATTCTTGGGATATTTCATCTCCTACTTTGGAAGTGGTTTGGGAATAAGTGCAATATGGACACAAATGTTCAGAAGAGGCGAGAAAACAAGAAGTCGTTACGGGTTAAGGTTATTAGTCTGGGAAATGCAGAGGTGGGGAAGAGCTGCATTATTAAACGATACTGCGAGAAGCGGTTTGTGCCCAAGTATCTAGCCACTATTGGGATAGATTATGGTGTAACCAAGGTTCAGGTTCGAGACAGGGAGATAAAAGTAAACATTTTTGATATGGCTGGACATCCTTTCTTTTATGAGGTTCGCAATGAGTTTTATAAGGACTCTCAGGGGGTGATTCTGGTCTATGATGTTGGTCTGAGGGAGAGTTTCGATGCTCTGGACAGCTGGCTCACAGAGATGAAGCAGGAGATGGGCTCACAGGCCAACATGGAGAACATCATCTTCGTTGTGTGTGCCAACAAGGTTGACCTGACGAAGAGGCGAGTGGTGGATGAGAGTGAGGGGAGACTCTGGGCCGAGAGCAGAGGATTTCATTACTTTGAAACTTCTGCCCAGAGCGGTGAAGGCATCAATGAAATGTTTCAGGCCTTTTTCTCCTCTATAACTGACATGTGTGAAAATGGAGGGAAAAGACCTACTCCTGAGGTCAACGTAGGTTTTACCAAAGAGCAGGCCGACACCATCCGACGCATTCGCAACAGCAAAGACAGCTGGGATATGCTGGGGGTTAAACCTGGGGCCACAAGGGAGGAAGTCAACAAGGCATACAGGAAGTTGGCTGTACTGTTGCACCCGGACAAGTGTGTGGCCCCAGGAAGTGAGGATGCCTTTAAAGCAGTGGTTAACGCTCGCACGTCCCTGCTCAAGAATATCAAGTAGGAGCGTGTGCCCACACATAAGTGCATCTCACATGGTTTCCATTACATACATACTCCTCATTGTCATTTTTTTTTTTTATCTTCACTGTGCCATCGAAATATTATTTATTCTAAATGAACATTTTTGTTTGTTTGTTTGTTTAGATTGCTTGCTGTGGTGTTTTGTTTGTTGAATTTGTATTAAATATATATTTATTTATTTATAATTTTGATTATTTAATGTGCATTAAA

Function

symbol description
dnajc27 Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be located in nucleus. Orthologous to human DNAJC27 (DnaJ heat shock protein family (Hsp40) member C27).

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG:

id description
K19372 DNAJC27; DnaJ homolog subfamily C member 27

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_03556433_03560289.mRNA True 1776 mRNA 0.41 7 3556203 3561013

Neighbor

gene id symbol gene type direction distance location
CI01000062_03536428_03550126 NA coding downstream 5667 3535399 ~ 3550536 (-)
CI01000062_03511363_03532823 XDH coding downstream 23380 3511356 ~ 3532823 (-)
CI01000062_03500344_03507001 NA coding downstream 48872 3499927 ~ 3507331 (-)
CI01000062_03470252_03479300 SNAP23.1 coding downstream 76903 3470101 ~ 3479300 (-)
CI01000062_03436291_03454196 RIN3 coding downstream 101645 3435437 ~ 3454558 (-)
CI01000062_03601436_03604051 POMCA coding upstream 40281 3601294 ~ 3604343 (-)
CI01000062_03619844_03628631 SNX9A coding upstream 57989 3619002 ~ 3628631 (-)
CI01000062_03788892_03789185 NA coding upstream 227439 3788452 ~ 3789616 (-)
CI01000062_03837446_03838592 NA coding upstream 276149 3837162 ~ 3839062 (-)
CI01000062_04005001_04005527 NA coding upstream 443598 4004611 ~ 4005527 (-)
G261208 NA non-coding downstream 1131 3501916 ~ 3555072 (-)
G261226 NA non-coding downstream 65423 3490563 ~ 3490780 (-)
G261222 NA non-coding downstream 68968 3484660 ~ 3487235 (-)
G261220 NA non-coding downstream 72023 3483104 ~ 3484180 (-)
G261204 NA non-coding upstream 14900 3575913 ~ 3577974 (-)
G261239 NA non-coding upstream 54477 3615490 ~ 3615915 (-)
G261248 NA non-coding upstream 94146 3655159 ~ 3655391 (-)
G261285 NA non-coding upstream 137801 3698814 ~ 3699016 (-)
G261302 NA non-coding upstream 154199 3715212 ~ 3716217 (-)
CI01000062_00000216_00015634 EPRS other downstream 3540491 216 ~ 15712 (-)
G261400 NA other upstream 384422 3945435 ~ 3957385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003760 dnajc27,LOC106605409,LOC107733160,LOC107752776,LOC107674103 coding CM030121.1 CM030121.1 17618424 ~ 17622439 (+)