CI01000062_04170036_04182524 (DHX32B)


Basic Information

Item Value
gene id CI01000062_04170036_04182524
gene name DHX32B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 4169752 ~ 4182585 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000062_04170036_04182524.mRNA
AGTCGATTTGTTCGTGTTGATTTATTTGAGCACTTGAAGAGAGAGGCGCATTAGGGCAGCGATGGAGATGGAGCTATCCTCAACAGATGTGGAAAAACTATCTGAAATCAACGAAACTCAAGATATTGATTCGGATGATTTGCTGGAGTTGAATCAGTTCGACGGACTCCCTTTTTCTTCACGATATTACAAACTATTAAGAGAAAGAAAAGGTCTGCCGGTGTGGGAAGCGAAATGCGAGTTTATGGGTACTTTGATAAACAGCCAGATTGTGATAGTTACTGGCACAGCTAAAACAGGACAAAGCACTCAGATCCCTCAATGGTGTGCAGAGTTTTGCCTATCTGCGCAGTATCAGAATGGCATGGTAGTGTGCACTCAAATTCACCAACAGAGCACGGTGGAACTGGCCCTCCGTGTGGCCGACGAGATGGACGTCAACATCGGCAATGAGGTTGGATACAGCATCCCACTTCAGACCTGTTGCTCCCCTGACACTGTATTGAGGTACTGCACAGATGATGTGCTGCTCCGGGAAATGATGTCGGACCCCCTTTTGGAGCAGTATGGTGTCGTGGTCATTGATCAGGCCCAGGAACGCACCGTCAGCACAGACCTGCTCCTCGGACTGCTCAAAGACATGCTCCTCGCACGGCCGGAGCTCAGACTGGTCATCCTCACCGCCCCTCACGCCGCTGAGAAACTGCTACGTCACTATGGAAGCGTCCCTCAGATCCGGCTGGAAGGGCCACAGCCATGCGAGGTGGTGTATGGTAGTGGGAGAGGAGGTGTGAAGGATTACCTCTGCTCTGCTCTCAGACTGGCTCTGGAAATACATCAGAATCAAAACCATGGAGACATTGTGACATTTCTGGCAACTGAGCAAGAGATTGAATGTGCCCATGCCATTTTGCGGAGAGAGGGTGTCAATCTTGCGTTGTCTCATGGCGAGCTGGTGCCTGTGTCTCTGTGCCCGGCGCAAGGAGACAGTCTCTCAGTGCTGTCTGAGGAGAGCAAGAGCAGGAGAGTCTTCCTCACCTGCAGCCCCAATGAAGACTTATTCTGGGCCATTCACAGCATTCGCTTTGTGATTGATGCTGGAGTGCAAAAAAGATATGTGTACAATCCTAGAATCAGAGCCGACTCCATTGTTATCCGACCAATCAGCAAGAGCCAAGCTGAGAGCCGCAAACAACTTGCAGGCCCAACAGGCAAGTGTTTCTGTCTGTATCAAGAGGACACGTCACTTCCTGTTGAGAGCGTCCCTCACATTCTTGAGTCTGACATCACTTCCACTGTGCTCTTCCTAAAGCGCATGGAAATTGCTGGCCTGAGCAACTGTGACTTCGTTGACAGACCAGATCCAGAAGGCCTCATGCAAGCTTTAGAGGAACTCGACTATCTTGCTGCTTTGGATGATGACGGAAATCTCTCTGAGATTGGAATTATCATGTCAGAGTTTCCTCTCGAGCCACAGATGGCTAAGACTTTGCTTGCGTCTTGTGAATTTGACTGTGTGAGTGAAGTGCTGACCATCGCTGCCATGCTAACAGCTCCGAGCTGTTTCCTTACACCCCCAGTGGAAATGAGACAGAAAGCCTCACTGTGTCATCAGAGGTTCCAGCATGCAGAAGGAGACCACTTCACCCTTATTAACATCTTTAATGCTTACAGATATGCTAAGGAAGGGCCATACTCTAGCGTGGAACAGTGGTGTGAAGACCATTTCCTTAGTCTGGCTGCTCTTCAGACAGCAGATGCTATACGCTCTGAGCTAACAGAAATCCTGAAGCGGATAGAGCTGCCAGTGTCCTTACCTGACTTTGGCTCTAAAAGCAACAGCTTGAACATCAGACGTGCACTACTAGCTGGCTTCTTCATGCAGGTGGCGAGGGACATTGACGGGTCAGGGAATTACTTCATGCTAACCCATAAACATGTGGCTCAGATCCACCCGCTGTCTGGCTACGGAACCGAGATGCACAAGAAGAATCTGCCAGAATGGGTTCTGTACCATGAGCACACACTGTCAGAGAACAACTGCATCAGAACCGTCTCTCAGATCTCAGCACATGAGTTCATTCAGATGGCACCGCAGTACTTCTTCTATAACCTGCCACCTAGTGAGAGTAAAGACCTACTGCAGCACATTATAGATCACGGTTCAGCAGCACCATCTAAAGGCAAAAGAAAAACCCAGACCCCCAGCAGCCCTGCCAGTGAGGATCAACCGCATGAGCGCTGTACCATACAGTGATAGGGGAACTAGCATACCTTACCACTGCGTTACCATGACAGGATTCAAACAGGATGCTTACACTGCTACACAGTAACCGTGGAATTTATGAGGCACAACGAGGAATCTCCATAGACTTGATTGAAAAGAACAGATCGTGTAATCTGTTAAACATTTAGTGTGCCCGACCCCCTTCTCACAGTGCCCGGGACAATGCTTCTAAGTAATAACAATTTGTACAGTTGTCTCTGCTGAATTAATAACAATTTAAATAACCTACTGCTGTGCAGTAGTTAATGAATAAA

Function

symbol description
dhx32b Predicted to enable RNA binding activity. Acts upstream of or within lens development in camera-type eye. Predicted to be part of spliceosomal complex. Orthologous to human DHX32 (DEAH-box helicase 32 (putative)).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18994 DHX32; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000062_04170036_04182524.mRNA True 2541 mRNA 0.49 11 4169752 4182585

Neighbor

gene id symbol gene type direction distance location
CI01000062_04168268_04168705 NA coding downstream 633 4168268 ~ 4169119 (-)
CI01000062_04070271_04080873 YWHAZ, 1433B, YWHAQ, YWHAQA, YWHAQB, YWHAB coding downstream 88779 4070271 ~ 4080973 (-)
CI01000062_04054548_04067692 GCFC2 coding downstream 101782 4054467 ~ 4067970 (-)
CI01000062_04021845_04022218 EVA1A coding downstream 147534 4021477 ~ 4022218 (-)
CI01000062_04005972_04008217 NA coding downstream 161372 4005916 ~ 4008380 (-)
CI01000062_04198997_04247699 ADAM12 coding upstream 15886 4198471 ~ 4247955 (-)
CI01000062_04281826_04306521 NA coding upstream 99102 4281687 ~ 4306849 (-)
CI01000062_04318060_04327149 NA coding upstream 134820 4317405 ~ 4327452 (-)
CI01000062_04394309_04427992 FAM196AB coding upstream 211656 4394241 ~ 4427992 (-)
G261462 NA non-coding downstream 18284 4151135 ~ 4151468 (-)
G261430 NA non-coding downstream 79242 4090257 ~ 4090510 (-)
G261429 NA non-coding downstream 79744 4089804 ~ 4090008 (-)
G261380 NA non-coding downstream 81318 4087342 ~ 4088434 (-)
G261419 NA non-coding downstream 152383 4017123 ~ 4017369 (-)
G261529 NA non-coding upstream 125314 4307899 ~ 4308367 (-)
G261544 NA non-coding upstream 152711 4335296 ~ 4335653 (-)
G261559 NA non-coding upstream 178402 4360987 ~ 4361217 (-)
G261576 NA non-coding upstream 197515 4380100 ~ 4380551 (-)
G261400 NA other downstream 212367 3945435 ~ 3957385 (-)
CI01000062_00000216_00015634 EPRS other downstream 4154040 216 ~ 15712 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011550 dhx32b coding NC_007128.7 CM002901.2 32343121 ~ 32360489 (+)