G259626


Basic Information

Item Value
gene id G259626
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 1577744 ~ 1589919 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU294759
GGGTGAGGTCTTGTCTCCATCTCCTATAGAAACGGGCTCTGGGGTGGTGGCAACAGTTGGAGAGGCTGGATCTGTAGGCTGCTGCTGCTGCTGTTGGAATGATGGAGGTTGCTGCTGGGGAGAAGGCTGGGGTTTGATGTTGGTCTGAGGTTGAGTTTGAGGCTGTGGCGGTTGCTGCTGCATTGGTGGCGTTGGTGGAGGAAAAAGCAGTGGGACGGTGATTATGGAGCTGTCTTTTTGGGGCTCCGACTCTACCTCGCCATGGTCCTCCATTGAGTTCATCACAGACACCAGTTTCGCCTTCTTCTCTGCCTGCTCCAACTTCCACTTGGCCAGCAACTCCTCCCTGGTCCTCTTGCTAATGTAATAAGGGTCACCGGCCTGGAAGGTTACTCTGGGCATGGGTCTTTGACGGAGGCTGATTTCCCAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU294759 True 431 lncRNA 0.55 2 1577744 1589919

Neighbor

gene id symbol gene type direction distance location
CI01000062_01419375_01443524 HADHA, HADHAB coding downstream 134045 1419087 ~ 1443699 (-)
CI01000062_01401358_01417189 TMEM62 coding downstream 160555 1400405 ~ 1417189 (-)
CI01000062_01361295_01382538 ELMSAN1B coding downstream 194973 1361295 ~ 1382771 (-)
CI01000062_01210373_01227487 MTA1 coding downstream 350257 1210060 ~ 1227487 (-)
CI01000062_01191296_01194695 TMEM229B coding downstream 383049 1190693 ~ 1194695 (-)
CI01000062_01747676_01766964 IMPG1B coding upstream 157757 1747676 ~ 1766964 (-)
CI01000062_01787025_01788167 HTR1E, HTR1B coding upstream 197097 1787016 ~ 1788512 (-)
CI01000062_02087992_02119506 NA coding upstream 498052 2087971 ~ 2120066 (-)
CI01000062_02287961_02292055 NA coding upstream 697464 2287383 ~ 2292092 (-)
CI01000062_02400091_02406400 CMPK2 coding upstream 809835 2399754 ~ 2406400 (-)
G259635 NA non-coding downstream 29047 1548495 ~ 1548697 (-)
G259632 NA non-coding downstream 32685 1541102 ~ 1545059 (-)
G259633 NA non-coding downstream 41809 1534445 ~ 1535935 (-)
G259630 NA non-coding downstream 47309 1530010 ~ 1530435 (-)
G259619 NA non-coding downstream 51343 1526025 ~ 1526401 (-)
G259675 NA non-coding upstream 58338 1648257 ~ 1648457 (-)
G259705 NA non-coding upstream 147552 1737471 ~ 1738265 (-)
G259725 NA non-coding upstream 202367 1792286 ~ 1792555 (-)
G259737 NA non-coding upstream 227890 1817809 ~ 1818152 (-)
G259745 NA non-coding upstream 244140 1834059 ~ 1834290 (-)
CI01000062_00000216_00015634 EPRS other downstream 1562032 216 ~ 15712 (-)
G261400 NA other upstream 2355516 3945435 ~ 3957385 (-)

Expression


Co-expression Network