G259737


Basic Information

Item Value
gene id G259737
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 1817809 ~ 1818152 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU294880
TAAGGGTCTTATCTATTCCGCCAAAACCGTACTTCCGTATTCTTCAAAAAGCTTAAGCTGAATGTCCTACACCTTCCCTATTCAACTTACGGAACGAACACGGCACCAGTTCCGTTTTTTCCGTAAGTAGAATAGGGAAGGCGTAGGACATACAGCGTAAGCTTTGAAGAATACGGAAGTGCGGTTTTGGCGGAACCACTTGAAGGTGATCATTTGTTTATATAAAGCGCATACGTTTAAAAAAAATTTAGAAAATGACCGATCGTTTCGCTAGATAAGACCCTTATTCCTCGTCTGGGATCATGTAAAGCCCTTTGAAGCTGCACTAAAACTGTAATTTTGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU294880 True 344 lncRNA 0.41 1 1817809 1818152

Neighbor

gene id symbol gene type direction distance location
CI01000062_01787025_01788167 HTR1E, HTR1B coding downstream 29297 1787016 ~ 1788512 (-)
CI01000062_01747676_01766964 IMPG1B coding downstream 50845 1747676 ~ 1766964 (-)
CI01000062_01419375_01443524 HADHA, HADHAB coding downstream 374110 1419087 ~ 1443699 (-)
CI01000062_01401358_01417189 TMEM62 coding downstream 400620 1400405 ~ 1417189 (-)
CI01000062_01361295_01382538 ELMSAN1B coding downstream 435038 1361295 ~ 1382771 (-)
CI01000062_02087992_02119506 NA coding upstream 269819 2087971 ~ 2120066 (-)
CI01000062_02287961_02292055 NA coding upstream 469231 2287383 ~ 2292092 (-)
CI01000062_02400091_02406400 CMPK2 coding upstream 581602 2399754 ~ 2406400 (-)
CI01000062_02473721_02477346 IAH1 coding upstream 655382 2473534 ~ 2477346 (-)
CI01000062_02488009_02560794 ASAP2A, ASAP2, ASAP3 coding upstream 669657 2487809 ~ 2562434 (-)
G259725 NA non-coding downstream 25254 1792286 ~ 1792555 (-)
G259705 NA non-coding downstream 79544 1737471 ~ 1738265 (-)
G259675 NA non-coding downstream 169352 1648257 ~ 1648457 (-)
G259626 NA non-coding downstream 227890 1577744 ~ 1589919 (-)
G259635 NA non-coding downstream 269112 1548495 ~ 1548697 (-)
G259745 NA non-coding upstream 15907 1834059 ~ 1834290 (-)
G259747 NA non-coding upstream 19560 1837712 ~ 1837921 (-)
G259750 NA non-coding upstream 21441 1839593 ~ 1839892 (-)
G259754 NA non-coding upstream 26511 1844663 ~ 1844896 (-)
G259755 NA non-coding upstream 27552 1845704 ~ 1845925 (-)
CI01000062_00000216_00015634 EPRS other downstream 1802097 216 ~ 15712 (-)
G261400 NA other upstream 2127283 3945435 ~ 3957385 (-)

Expression


Co-expression Network