G260202


Basic Information

Item Value
gene id G260202
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 2377209 ~ 2377683 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU295380
TGTTAGCTCCTCTCCTTTTGCTACGTAGGCAACACTGCAACTGTTGAGGGCATAAATCATCCAACTTTCCACACTTACAACATTTGGGTATTCCTTGGAGGATATAATCAAAAATGGAGTGGGAAGGTTAAAGTTTTTAATTGTCAGTAAATAAATAAAATAACACTTAGCTAAAACAGTAACTCACTAGGTGTAAATTGAAAAGGGGACCTAAGAGGGATTAAAAGTTGGGCTACACTAAGAGGCTATATTAAAATGCATGTAATATTGAAGATGTCACCTAATATTTGCAGAGATTTAATCTTTCAGTTTGACTGTTAACTCACTAAAAAAAAACATAGACCCTTTCAAACCGAAAATCTCTGTTGGGAATCACTGTAAGCAGATGTGGTTCTGGGTGACTGTGTGTCCTACGTGCCTCCTAGCATCAAAAATGGACACAACAAAATTAGGGATTTAACTATAACGAACGAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU295380 True 475 lncRNA 0.36 1 2377209 2377683

Neighbor

gene id symbol gene type direction distance location
CI01000062_02287961_02292055 NA coding downstream 85117 2287383 ~ 2292092 (-)
CI01000062_02087992_02119506 NA coding downstream 257143 2087971 ~ 2120066 (-)
CI01000062_01787025_01788167 HTR1E, HTR1B coding downstream 588697 1787016 ~ 1788512 (-)
CI01000062_01747676_01766964 IMPG1B coding downstream 610245 1747676 ~ 1766964 (-)
CI01000062_01419375_01443524 HADHA, HADHAB coding downstream 933510 1419087 ~ 1443699 (-)
CI01000062_02400091_02406400 CMPK2 coding upstream 22071 2399754 ~ 2406400 (-)
CI01000062_02473721_02477346 IAH1 coding upstream 95851 2473534 ~ 2477346 (-)
CI01000062_02488009_02560794 ASAP2A, ASAP2, ASAP3 coding upstream 110126 2487809 ~ 2562434 (-)
CI01000062_02724898_02725662 ID2A, ID2 coding upstream 346296 2723979 ~ 2726153 (-)
CI01000062_03024898_03029604 EIF2S1A, EIF2S1B, EIF2S1 coding upstream 647196 3024879 ~ 3029696 (-)
G260201 NA non-coding downstream 4417 2372577 ~ 2372792 (-)
G260200 NA non-coding downstream 4965 2371936 ~ 2372244 (-)
G260198 NA non-coding downstream 10937 2365935 ~ 2366272 (-)
G260194 NA non-coding downstream 15113 2361778 ~ 2362096 (-)
G260188 NA non-coding downstream 20458 2356503 ~ 2356751 (-)
G260207 NA non-coding upstream 7071 2384754 ~ 2385126 (-)
G260209 NA non-coding upstream 9563 2387246 ~ 2387578 (-)
G260160 NA non-coding upstream 29345 2407028 ~ 2410972 (-)
G260167 NA non-coding upstream 105416 2483099 ~ 2484159 (-)
G260245 NA non-coding upstream 184927 2562610 ~ 2562810 (-)
CI01000062_00000216_00015634 EPRS other downstream 2361497 216 ~ 15712 (-)
G261400 NA other upstream 1567752 3945435 ~ 3957385 (-)

Expression


Co-expression Network