G261251


Basic Information

Item Value
gene id G261251
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3846434 ~ 3852053 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU296520
CAGCATGTTGGAGCTGGGGTAGCGTGTGTAGAAGAACATCAGCTTGGCCTTCTTCAGATGGTTCGGAGAAAGCCCCTCTTGGATTGTACTTCCTGAATATGGAGAGATGTCGGACATGTCCTGAAGGTCTCCGCACTCTGACTTGATGAGGGACAAGGACAAGCCTTCATTCCCTGGGTGCGTTGGTGAGATGGAACGATGGTGGCTGAGGTGGTTGGACGACATCTTGGTCCGTAGGCTGGTGGTCTCTCTGGACAAATCCAGAGACTCGGGAGAAGACCTGTCTTTTCCTGGGTAAGGCCCTGTTGGGGCACCTAAGGGGCTCTGGAAAGGGTAGCCCATTAGAGGAAGGGGGAAAGGATGGCGGAAAGAGGGAGGACTAAAGCCCATTGCGGAAGATAAGGGTGAGGGGTGCAGGGAAGGGTGGTGGTGACCCCCGGGTGTGGGAAGAGACCCGGACTGATCTGAAGAGTTCTTTCTCACTACCAAAGGCAGGGCCTCTGTTTGGTCATTCGAGTTGGGCACCTGCATACTAGCAAAAGTGTCCAGGGGATTAGGAATGATGACATCACCAAAACATTGCAAGCGCTGGTTGGCAGTATGGAAGTTTGGGTTTTCTCCATTGACTGCGAAACGATCAGGGGGCATCTGCAGGGGTGGGAAAACCTGAGGAACTGGGCGTGGTGGCTTAGCAAAGACCTTCACCACGGTGTCCACTACCTGGGACATTGCTGTATTGAGCTCTTGTTTTAGCGTCTCTGCTAGCTGTTTGCCCTCTGCATGCATGGAGGTTGGTCCCTGGCTCTTTCCTCGTGACCCATCACGCTTGGGTTTGTCCCCCGCCGTCACCATGGTGTGCTCCCGAATAAGTGCGCGTGCTCGATCCAAGAAGTGCCCTGGATCCAAGTCGGACATCTCGTTGTCAGAGCGATCTGGGACGGAGTCGTGGGCACGATTGTCCATTCCATCAGAACGCATGCTGTCTTCAGAGATGTTTCCATCTTCATCGTTCTCAGAGTCAGTGCTGTCATAGATCTGGTAGAACTTCTCTTGCAGTTGCCGCAGCTGCTTCTGCATGTCCTCCAGCTGTAGTTTCAGTTGCCGGCGTTCCTCGTGCTTCTGCTCTTTGCGCGCGGAGACGAGTTGCTGGAAACTCTGCTGCTGCTGCTGTGGCAGTTTCTGCTTGCGCTTGTTTTCCCGGTAGTTCTCACGAGGACTCGGGGGCTGGGCTGCCCCCTCGCGCTCGTTATCACCTGCACGGAGCGTGACGCTAGGAGAATGGCTCATCCCACGGATGATGTTTTCCACCCGGGCTCGTTTGGCCCTAAGATGCTCATCTGTTAGCCTCTCCATTTCAAATTGGGTCATGGAGGGCCTGTTGAATGGTGAAAGGCACTCCTGAGGGCTGCCCCGCGAGGAGTTGCTGCAAGCATCCTCCTGCTGGATCTCTGATCCGGTGCTCGAGAGGCCACTTCCCTGGAAATTAGTCTCACTGCCTCCATTTTTGGTCAAATTGTTTTTCAGGAGCTGGGAGATGATAGTTGCCCCTGGAAAGGGCATCATAGCGTCTTCGTAAGAGTTCGCCCTCTTCAACAGCTTGCGAAGCACGTTGGACTTCTCGCCGTCTGCGTGCTGCACCACTGAACACTCAACATCTTGCTCGGAACCGTGGGGATTCATGGCACTGAAAAAGGTTGCTTTTGTGCGGGTAAAAACCACAGATGCTTGCCCAACAGTCCTCTTCACTCCTATGTCAACTCTTCTTCTCTTGGTTTGTCTGCTTAAGAGGGATGTGCTGTCATGGTCAGGCATCACTGGAACTGTTATTGTGCCATTTTTGAAAGCCTGTCAGCTGGGCACAGCTCGAGAACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU296520 True 1873 lncRNA 0.54 2 3846434 3852053

Neighbor

gene id symbol gene type direction distance location
CI01000062_03837446_03838592 NA coding downstream 7659 3837162 ~ 3839062 (-)
CI01000062_03788892_03789185 NA coding downstream 56818 3788452 ~ 3789616 (-)
CI01000062_03619844_03628631 SNX9A coding downstream 217803 3619002 ~ 3628631 (-)
CI01000062_03601436_03604051 POMCA coding downstream 242091 3601294 ~ 3604343 (-)
CI01000062_03556433_03560289 DNAJC27, DNAJC27.S, DNAJC27.L coding downstream 285421 3556203 ~ 3561013 (-)
CI01000062_04005001_04005527 NA coding upstream 152558 4004611 ~ 4005527 (-)
CI01000062_04005972_04008217 NA coding upstream 153863 4005916 ~ 4008380 (-)
CI01000062_04021845_04022218 EVA1A coding upstream 169424 4021477 ~ 4022218 (-)
CI01000062_04054548_04067692 GCFC2 coding upstream 202414 4054467 ~ 4067970 (-)
CI01000062_04070271_04080873 YWHAZ, 1433B, YWHAQ, YWHAQA, YWHAQB, YWHAB coding upstream 218218 4070271 ~ 4080973 (-)
G261255 NA non-coding downstream 18000 3827847 ~ 3828434 (-)
G261329 NA non-coding downstream 45094 3801003 ~ 3801340 (-)
G261326 NA non-coding downstream 50888 3795304 ~ 3795546 (-)
G261302 NA non-coding downstream 130217 3715212 ~ 3716217 (-)
G261249 NA non-coding upstream 26991 3879044 ~ 3882537 (-)
G261397 NA non-coding upstream 69961 3922014 ~ 3924006 (-)
G261411 NA non-coding upstream 147368 3999421 ~ 4000653 (-)
G261417 NA non-coding upstream 163675 4015728 ~ 4015943 (-)
G261419 NA non-coding upstream 165070 4017123 ~ 4017369 (-)
CI01000062_00000216_00015634 EPRS other downstream 3830722 216 ~ 15712 (-)
G261400 NA other upstream 93382 3945435 ~ 3957385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003754 prox1a,LOC107592773,LOC107752784 coding CM030121.1 CM030121.1 17275642 ~ 17291950 (-)