XLOC_000103 (fscn1b)


Basic Information

Item Value
gene id XLOC_000103
gene name fscn1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8662530 ~ 8670486 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000195
CCGAGCTCCAGCATGTCTTCAGAGGGAATAGGCGAGACGCTGGTGATTCGGTTCGGCCTGATAAATGCCGATAACAAATATCTGACAGCGGAGATGTTTGGTTTTAAAATCAACGCCTCCGCGAGCTCAATGAAGAAGAAGCAGGTGTGGACGCTGGAGCAGTCCGGGGACCACGGAGACTCCAATGCTGTGTTCATCAAAAGCCACTTGGGTCGATACCTCGCCTCCGACAAGGACGGCAAGGTGACCGCAGACAGCGAGCAGCCCGGCCCGGACTGTCGGTTCCTCGTGATCGCCCACGACGACGGCCGGTGGTCCCTGCAGTCCGAGCCCCACGCGCGCTACCTGGGCGGGACCGAGGACCGGATCGCGTGCTTTGCGCAAAGCATCTCTCCTGCGGAGAAGTGGAACGTGCACCTGGCCGTGCACCCGCAGGTCAACGTGTACAGCATCGCGCGCAAACGGTACGCGCACCTGTGCGCCGATAGGAATGAGCTCGCCGTAGACCGCGACGTGCCGTGGGGTGTGGACTCGCTGCTCACACTCGTGTATCTGGACCACCGCTATCACCTGCAGACCGCTGACAACCGCTTCCTCTCGTGCGGCGGAACCCTGACAGCCAAACCAGACCGGGACACCGGCTTCACGCTGGAATTCCGCGCGGGTAAGGTGGCTTTCCGAGACGCCACGGGAAAATACATCGCGCCTACGGGCCCCACCGGGACCATGAAGTCGGGCAGGAGCGCGCGTGTTGGCAAAGATGAGTTGTTTGTCCTCGAGCAAAGTCACGGGCAAGTGGTGCTCACCGCCAGCAATGACAGAAACATCTCCATGCGCCAGGGAGTTgatttatcagccaatcaggatgAGGAGTCTGATCAGGAGGTGTTTCAGATGGAGATGGACAGAGAGAGCAAGCGCTGTGCCTTCAGGTCTTTCAATGGGAGATACTGGAGTCTCACCTCGAGTGGAGCCATCCAGTGCTCTGCTTTAACCAAATCTCCCAGTTGTTTCTTCGACCTGGAGTGGAAGGGCTCAAAAGTGGCACTGAAGGCCAGCAATGGCAAATATCTGGCAGCCAAGAAGAACGGACAGCTGGCAGCCGCGGTGGACTCTGCAGGCGAGCAGGAGGAGTTTGTGTTGAAGCTCATCAACAGGCCGCTGATTGTGTTGCGCGGTGAACATGGCTTTATTGGCTGCCGCAAACAAGGAACCGGTACACTCGATTCCAACCGATCTTCCTATGATGTCTTCCAGTTAGAGTACAACAACAATGCATACAGCCTCAGAGACTCCGTGGGGAAGTACTGGACGGTGGAGTCAGACGGCTCTGTGATCAGCAGTGGTGCGGCTCCTGTCTATTTCCACTTTGAGTTCTGCGATTTTAACAAAGTGGCTATTAAGACGAAGGAGGGCAAATATCTTAAGGGAGACCACGCTGGAGTGCTGAAAGCCAGCGCTCAGGGGATTGCTGATGCCACATTGTGGGAATACTGAGAAACATTTATGAAGccacacagacaaacaaatgtGTGCTCCTTTCAATATTCCAACTAAACACATCCTCTATAGCACAAGCAGACAGTCGTCATATCACACAACACAATTACATTACATCTCAACATAAGTCTTCAAGGcacaaaaacacatttgaatGTAAAAgtacaaacaaatgcacaaacgATTTGTCTTtggtttaaaggggtagttcactcagaaatctacattctgtttttatttttttttcaaacttgaGAATCACAAATCAAGATATGTTTACttttatggagccagatcagtctcaaaaataatacgtttgcaaaatacaattcatacacaattcacatttacaacatgtaatttgtaaatttaaaaggCAATTCTTTAATACACAattccaattcataaatttaaaacacgactcgtaaatacacaaatccaattaataaattcaaaacaagattcgtaaatacacaaaacacaattaatctaattaaaacactattcgtaaatacacaaaacacaattcgtaaattaaaaacacgacTCGTAAATACACAATTCAtatattcaaaacatgattcgtaaatacacaattcatattttcaaaacatgattcgtaaatacacgaaacacaattcgtaaattcaaaacacaatttgtaaattcaaaacacaatttgtaaactcaaaacatgatttataaatacacaaaacacaactcgaaaacataatttgtaaattcaaaacacgactcttaaatgcacaaatccaattaataaattcaaaacatgattcgtaaatacacaaaacacaactaatctattcaaaacacaattcgtaaatacacaaaacacaattcataaattcaaaagacGGTTTGTAAATGAAGAAAacgcaattcataaattcaaaacacagtttttaactacacaaatccaattcgtaaattcaaaacatgatttataaatacacaaatccaattcgtaaattgaaaacacaattcgtaaatacacaaaacacaattcgtaaaatCAAAACAGTTCATAACTATGCAAAACATAATTACAAAATtttaaacacaattcataaatatacaaaccCAATTAGTAAATTCTAAGCACAATTTGTTTGTAAATGCACACATCCAATTCAGTTGgggaaatatttatttgtgtttatgattttatgaaacatttacagtatgatttgtaaaattgtgtttagatttttacaaattggatttgtgtatttacgaattgtgttttgaaattactAACTAGATTTTGTAGATTTGAATTATGCTGTGCATGTACAGTatgagttttgtttttgcatattatttttgagactgatctggctccatactttTTTCCATAatcgttttttgttgttgtttcaaaTAAAGAAAGTTAATTCATGTTTGGAATGATGcgaggaaatgatgacagaatgtttacTTTTAGGTaaactggccctttaagagaagCACAAgctatagtatttttaaaattattgtcACACAAACTCCTAATGTGCTTTGCTCAATAACAGATTAAGATAAGTTCCTAAAAAGGAGAAATACTAATTTAGACTAAGCAATTGAATGCACTTTGTATATAGGCTCATGCAAAGTCACTGTGTCTGCCTCCCAGGGGCTTTCATGGCCTTATTTTACTCAATAGCTGCTTCTAAGAAATTCAAAATCTAGATGTTGTTACATAATGGACAATAATTTGCTTATGTAAAATGGGCGTAGATCCGTGTCTCATAAGCTGAGCCTTTGGCCATAGGTTTTGTTCTTGCTCCCAAAAACATTTTTAGCGTGAGCTGGCGTCTGTAATGAGGCCAGGATTTAAATAGCAGCATCACGGCTCagaaaatacaggagaaaaatACACGTTCACATTAGAGAGATTcagacttcacacacacacactcaaaagcaAATCATTTGTCTGTCAATTTTGTAGTGTTTGTGGCCATTTTCAATGACAAGATTTGTATTCAGCGCTGTTCTGGCTACAGGAACTAAAGCGCTTTTTTAATGTAACTCCGGCTTATTGTTGATAACATGTTGATTTGCACTCTTTTTCGGCTAAAGCTTTTTCATGTGAAAGTGTTGAAGATTAAGATGAAGTGTTTGTGCCTTCCTTGGTGAGGTCAGATCCCCTAAGGTGTGAAAATGCAGTTAtttgaacttttttatttcttattttattctcATCATGTGTCATTTGCAACTGGATATGAcaatgaaactaataaaaatgtcagaAAGT

Function

symbol description
fscn1b Predicted to enable actin filament binding activity and protein-macromolecule adaptor activity. Predicted to act upstream of or within actin filament organization and cell migration. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in brain and telencephalon. Orthologous to human FSCN1 (fascin actin-bundling protein 1).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007015 actin filament organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120507-1 Predicted to enable actin filament binding activity and protein-macromolecule adaptor activity. Predicted to act upstream of or within actin filament organization and cell migration. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in brain and telencephalon. Orthologous to human FSCN1 (fascin actin-bundling protein 1).

Ensembl:

ensembl_id ENSDARG00000037747

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000195 True 3781 mRNA 0.41 5 8662530 8670486

Neighbor

gene id symbol gene type direction distance location
XLOC_000102 SLC29A4 coding upstream 51966 8601935 ~ 8610564 (+)
XLOC_000101 si:ch211-160d14.15 coding upstream 65515 8593560 ~ 8597015 (+)
XLOC_000100 NA coding upstream 71894 8587230 ~ 8590636 (+)
XLOC_000099 AL928650.4 coding upstream 76464 8579197 ~ 8586066 (+)
XLOC_000098 AL928650.2 coding upstream 85256 8575307 ~ 8577274 (+)
XLOC_000104 NA coding downstream 23710 8694196 ~ 8702684 (+)
XLOC_000105 NA coding downstream 280388 8950874 ~ 8965939 (+)
XLOC_000106 NA coding downstream 296993 8967479 ~ 8976422 (+)
XLOC_000107 tlr2 coding downstream 313582 8984068 ~ 8988504 (+)
XLOC_000108 prkcba coding downstream 334233 9004719 ~ 9064912 (+)
XLOC_000097 NA non-coding upstream 87473 8573777 ~ 8575057 (+)
XLOC_000087 NA non-coding upstream 988301 7672121 ~ 7674229 (+)
XLOC_000084 NA non-coding upstream 1149768 7512529 ~ 7512762 (+)
XLOC_000111 NA non-coding downstream 458900 9129386 ~ 9132490 (+)
XLOC_000116 BX323038.1 non-coding downstream 607360 9277846 ~ 9285351 (+)
XLOC_000120 NA non-coding downstream 1216469 9886955 ~ 9914630 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_00486146_00492357 FSCN1B, FSCN1 coding CI01000300 null 485894 ~ 492836 (+)