G261380


Basic Information

Item Value
gene id G261380
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 4087342 ~ 4088434 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU296662
GCAATAAGATAATCAGTTCTCCAGGTTTGAGCACTTTCAGCAAGGGCTTTGATGCATCCACTGAGACAAGGTTATTGTATTTTTCATATGGTAATTAGAACAGAATCTAATTTAAGTAAAGATGGATGAATGTGTTGAACCAGTGCCTGCTTGTTAAACCGATCATGTTACTGATGCGTGAAATGTAGACTGTAGAAATGTAAACGGTTTTGTTTAATAGGGTTGGAGGAAATTTGGACAGGATAAAGTGCAACACTGATCATTTGTTTGAGCTTTTACATGCGGCTTGGTGTTTTTGCTTATGGGTGGGCGGATTGTTCGCTTTATGTGAAACAGCTCTTTTAACACCTCCATGTAGTTGCTACTGTACTGGCTCTCTAAGACCACAGGCTACCTTGAAAACCAGTCTAGATTTAACTGAACAGACTTTCTGCAGACAGGACAGTCATCAACCACCAGTACAGACAGAAAGGCTTGCTGTCTGTCTGCTCTCTTATTAGCCTTCTCTTTCTGCATCTTACAACAATGGATCAACAGCCATTTTCAGGACTTTTCTATATGTTGGCAAATGTCTTTGTTCCTCTCTGACAGAACTCTGATGCCACATATTGATTCCCCTCAGGCGGTGTGACCTGTGAGCCACAGTGACAGCACCATCCCGACAGACTGCTCAGTGCTGCTGTTTGATCCATCACAGCAGATTTCACTTATATACTTCCATACTTCAGTTTTTGGTAACACTTTTCAATAAGGTTTAATTCATTGGTATGGACTTGCTACTGCTAGTAGATATGTATGGAAGATATGCTGCTGCTGCATAAATAGACATTAGGGCTGCACGATTAATCAAAATTTAACTGCACACAATTAGGCAAAGGCTGCAATTTTTTATGCGCAACTTCTCAGTGAAGCACGGCTCTGTGATCACTAGTAAATGCTGCCTCATCTGAAAGCCAGAGGGCGCTGTCGCGCAGAAACTCCAAATATGCCCCGCAGAAGTACGATATAACGCATGTCATTCTAGGAAATCCCTATGGGCATTATACTATCGCTGTAGCTAAAAGGGTTAGTTCACCCAAAAATTATAATTCTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU296662 True 1093 lncRNA 0.41 1 4087342 4088434

Neighbor

gene id symbol gene type direction distance location
CI01000062_04070271_04080873 YWHAZ, 1433B, YWHAQ, YWHAQA, YWHAQB, YWHAB coding downstream 6369 4070271 ~ 4080973 (-)
CI01000062_04054548_04067692 GCFC2 coding downstream 19372 4054467 ~ 4067970 (-)
CI01000062_04021845_04022218 EVA1A coding downstream 65124 4021477 ~ 4022218 (-)
CI01000062_04005972_04008217 NA coding downstream 78962 4005916 ~ 4008380 (-)
CI01000062_04005001_04005527 NA coding downstream 81815 4004611 ~ 4005527 (-)
CI01000062_04168268_04168705 NA coding upstream 79834 4168268 ~ 4169119 (-)
CI01000062_04170036_04182524 DHX32B coding upstream 81318 4169752 ~ 4182585 (-)
CI01000062_04198997_04247699 ADAM12 coding upstream 110037 4198471 ~ 4247955 (-)
CI01000062_04281826_04306521 NA coding upstream 193253 4281687 ~ 4306849 (-)
CI01000062_04318060_04327149 NA coding upstream 228971 4317405 ~ 4327452 (-)
G261419 NA non-coding downstream 69973 4017123 ~ 4017369 (-)
G261417 NA non-coding downstream 71399 4015728 ~ 4015943 (-)
G261411 NA non-coding downstream 86689 3999421 ~ 4000653 (-)
G261397 NA non-coding downstream 163336 3922014 ~ 3924006 (-)
G261249 NA non-coding downstream 204805 3879044 ~ 3882537 (-)
G261429 NA non-coding upstream 1370 4089804 ~ 4090008 (-)
G261430 NA non-coding upstream 1823 4090257 ~ 4090510 (-)
G261462 NA non-coding upstream 62701 4151135 ~ 4151468 (-)
G261529 NA non-coding upstream 219465 4307899 ~ 4308367 (-)
G261544 NA non-coding upstream 246862 4335296 ~ 4335653 (-)
G261400 NA other downstream 129957 3945435 ~ 3957385 (-)
CI01000062_00000216_00015634 EPRS other downstream 4071630 216 ~ 15712 (-)

Expression


Co-expression Network