G261529


Basic Information

Item Value
gene id G261529
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 4307899 ~ 4308367 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU296846
TGGCAAAAGAGCCTGCTGCATGACTGGATATAACAGGGGAAACTGCGAAAACACAAGTAAAACAAATGATTACACTAAAGATTGGGCTCGATAGTGTTTCTTACAACTTGTCAAAGAAACTTAATCTGTGGATATTGACATGCACCCAGGAATCGTGTTTCCTGACATTTATATGTACCTGATTTCGACGCCAGGGAAATACATAAAGCACATCTGCCTGTGAGTATTTTATATAAATACAATATAGGTAGGTACCTCAGATTTCTTGTCAAATCTATCTGTACAGTCAATCGCAAAGCTCTTTCCCGTTTTGGTTGTTGCCAGGTTTTCACAACAAAACCCACCCAATTGCTCCTCAAAACTAGCCTGATGGCATTTTAGGGGGGGTTTTGCGGGGCTCCCCTGGTAAAATTCGCGCTCCAGGGACTAAATATCACATTACTTTGGGTCGATTCAACCCACGGACATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU296846 True 469 lncRNA 0.42 1 4307899 4308367

Neighbor

gene id symbol gene type direction distance location
CI01000062_04281826_04306521 NA coding downstream 1050 4281687 ~ 4306849 (-)
CI01000062_04198997_04247699 ADAM12 coding downstream 59944 4198471 ~ 4247955 (-)
CI01000062_04170036_04182524 DHX32B coding downstream 125314 4169752 ~ 4182585 (-)
CI01000062_04168268_04168705 NA coding downstream 138780 4168268 ~ 4169119 (-)
CI01000062_04070271_04080873 YWHAZ, 1433B, YWHAQ, YWHAQA, YWHAQB, YWHAB coding downstream 226926 4070271 ~ 4080973 (-)
CI01000062_04318060_04327149 NA coding upstream 9038 4317405 ~ 4327452 (-)
CI01000062_04394309_04427992 FAM196AB coding upstream 85874 4394241 ~ 4427992 (-)
G261462 NA non-coding downstream 156431 4151135 ~ 4151468 (-)
G261430 NA non-coding downstream 217389 4090257 ~ 4090510 (-)
G261429 NA non-coding downstream 217891 4089804 ~ 4090008 (-)
G261380 NA non-coding downstream 219465 4087342 ~ 4088434 (-)
G261419 NA non-coding downstream 290530 4017123 ~ 4017369 (-)
G261544 NA non-coding upstream 26929 4335296 ~ 4335653 (-)
G261559 NA non-coding upstream 52620 4360987 ~ 4361217 (-)
G261576 NA non-coding upstream 71733 4380100 ~ 4380551 (-)
G261400 NA other downstream 350514 3945435 ~ 3957385 (-)
CI01000062_00000216_00015634 EPRS other downstream 4292187 216 ~ 15712 (-)

Expression


Co-expression Network