CI01000063_00737387_00744421 (PANK1, PANK1B)


Basic Information

Item Value
gene id CI01000063_00737387_00744421
gene name PANK1, PANK1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 737084 ~ 745002 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_00737387_00744421.mRNA
CTATATGTAAGTAGGCGGCTCTGAAACATGACGTTTCAGCAGAGGGAGTGGAGGCATTTTCCTTAGTGACGTCGCATATACCGGCTGTTTGACTCGGAAACAGCCATACAGCGTGTAAAGAAGAAATGACCGACAGTGACCTCGAATGAGATGTTGAAGACCTACCTATTGTCTTCATCTCTTTACAACACATCAGCATTTATGTAGGATTCTGATAAAAACACTTGTACATTTTGAAGCGCCTTCGAACCGTTGAGTCGTTACGCATCTGTCTTCCGAACGTTTACATTTGCTACGTAAATAATGGAAAATGCTGAAACATCCGATCAAAACGGAACGACGCACTACACGAACGGTTTAGTGAACGGATTTCACACCCCTCAGTCCGGTAACGGGGACTGTATTTCGTCTAACGGAGGTGGTCTGGTTGCTAGTGACAGTAGCGGTGGCCATAATGGTATTGAAAATTTCCACCATTTTCATCAGGATGTACACAACAATGGTTCGCCTGCGAAGCGCTGCAGACTCAGAAGACGCATGGATTCGGGAAAGAAGAACAGACCTCCCTTTCCGTGGTTTGGTATGGATATTGGAGGCACCCTGGTAAAGCTGGTTTACTTTGAGCCCAAGGACATAACTGCTGAAGAAGAACAAGAGGAAGTGGAGAGCCTGAAGAGCATCCGCCGCTACCTGACCTCCAACGTGGCCTATGGAAACACGGGTATCCGTGACGTTCACCTGGAGTTGAAGAACCTCACCATGTGTGGCCGCAAAGGCAACCTGCACTTCATTCGGTTCCCCACTCAAGACATGCACCGCTTCATCCAAATGGGCCGAGACAAGAACTTCTCCAGCCTGCACACCACGCTGTGTGCCACGGGTGGGGGCGCATACAAGTTTGAGGAAGACTTCAGAACGATTGCTGGTTTGGAGCTGCAGAAGCTGGATGAACTGGACTGTCTTATTCATGGTCTGCTGTACGTTGACTCAGTCGGGTTCAATGGCCATCCCGAGTGTTATTTTTTTCAAAATCCGTCTGACCCTGAAAACTGTGTCAAGAGGCCATTTAGCCTGGAGAACCCCTTCCCTATGTTGCTGGTAAACATTGGCTCGGGGGTTAGCATCCTGGCTGTCTACTCCAAGGATGATTACAAGCGGGTCACGGGCACAAGTTTAGGAGGTGGTACGTTTCTAGGCCTGTGTTGCTTGCTGACCGGCTGTGATACATTTGAGGAGGCCTTAGAGATGGCGACTAAAGGGGACAGCACAAATGTGGACAAACTAGTGAAGGACATTTACGGTGGTGATTATGAACGCTTTGGTCTCCAGGGTTCTGCCGTTGCATCCAGTTTTGGTCATATGATGAGCAAGGAAAAACGTGATAGTATAAGTAAAGAGGACCTGGCCAGGGCCACTCTTGTCACAATCACAAACAACATTGGCTCCATCGCCCGTATGTGTGCAGTGAACGAGAATATCGATAAAGTGGTTTTTGTTGGGAATTTCCTTCGGATCAACACTGTATCAACTAAGCTGCTAGCCTATGCCATGGACTTCTGGTCTAACAGTCAACTGAAAGCCCTTTTCTTAGAACATGAATACCAATATAGAAGGTACAAGTGGAGAAATGAGACCAGAAAAGATGGTAAACTGTTACTGAAGATGAATGGATATTTTGGAGCTGTTGGTGCCTTCCTAGAGCTACTGAAGCTGACTGAAGACTCCTGAGACACTGAGGAAAACCCAACCTGCAAACCAGAAGCTGCTGTAAGATTTCAGGAATGCCACATCCTCTAATAAGAAAAAGCCATTTAATAATATGACCGAGTTTCCGTTTCCCCTCAAATCATCGACACGTCAGCCCTTCTACGCTTGTGACAGAAGCAGGTGACCAAGAGGAAACAACAACGCACTTTCAGTGTGTGATGAGCTGCACCTCATGTTAACTATGCCTCATCACTGCTTCTATAAATCCAGCACAGCTTTGGCTTTGCCGTTTATTGATATTTTGAGTGGAAGATGATTTAGGACACTAATTATAATGCCTGTATACTCCCTCTACACCCTGTTTGTGAGCTTTATGAAAATAATTGTGATAAACATATGAAAAGGGTTTGGAGGTGAGTATTATATTTATAAACGGGACAGTATAAAAACAACCTTCCCCTCTAAACAAATCATGCTTCGAACTGCAAATCAGATTTATCATTCATTGACTGCATAGACGAGCAGTCCTTAAAAGTCATTTGCACAGGACTTTGCTCTCCCTGTTCTTGTCACATATGAGCATTCATCATATCTGTATTACA

Function

symbol description
pank1b Predicted to enable pantothenate kinase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including anterior axial hypoblast; hatching gland; mesoderm; pronephric duct; and sensory system. Orthologous to human PANK1 (pantothenate kinase 1).
pank1 Enables acetyl-CoA binding activity; pantothenate kinase activity; and protein homodimerization activity. Predicted to be involved in coenzyme A biosynthetic process. Located in cytosol and nucleus.

GO:

id name namespace
GO:0015937 coenzyme A biosynthetic process biological_process

KEGG:

id description
K09680 PANK1_2_3, CAB1, coaW; type II pantothenate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_00737387_00744421.mRNA True 2309 mRNA 0.46 8 737084 745002

Neighbor

gene id symbol gene type direction distance location
CI01000063_00669808_00687564 NA coding upstream 49268 669808 ~ 687816 (+)
CI01000063_00659693_00662317 NA coding upstream 74659 659630 ~ 662425 (+)
CI01000063_00562850_00563761 PPP1R3CB coding upstream 173162 562750 ~ 563922 (+)
CI01000063_00533801_00557577 MPP3B coding upstream 179378 533801 ~ 558334 (+)
CI01000063_00478894_00523263 NA coding upstream 213723 478894 ~ 523361 (+)
CI01000063_00768000_00776500 SLC16A12B coding downstream 21881 766883 ~ 777761 (+)
CI01000063_00811088_00811849 CH25H coding downstream 65879 810881 ~ 812197 (+)
CI01000063_00839103_00843726 ACTA2, ACTC1A, MGC53823, ACTG2, ACTC1, MGC75582, ACTA1, ACTC1.L, ACTBL2 coding downstream 93511 838513 ~ 843762 (+)
CI01000063_00861534_00863874 ANKRD22 coding downstream 115977 860979 ~ 864105 (+)
CI01000063_00889956_00941586 RNLS coding downstream 144954 889956 ~ 941740 (+)
G262060 NA non-coding upstream 26656 710110 ~ 710554 (+)
G262053 NA non-coding upstream 81423 655436 ~ 655661 (+)
G262043 NA non-coding upstream 107974 628910 ~ 629110 (+)
G262042 NA non-coding upstream 108511 628272 ~ 628573 (+)
G262037 NA non-coding upstream 112275 624559 ~ 624809 (+)
G262135 NA non-coding downstream 11385 756387 ~ 764451 (+)
G262080 NA non-coding downstream 44460 789462 ~ 809644 (+)
G262150 NA non-coding downstream 84675 829677 ~ 829953 (+)
G262152 NA non-coding downstream 86458 831460 ~ 831718 (+)
G262117 NA non-coding downstream 110160 855162 ~ 855434 (+)
G261984 NA other upstream 69702 665800 ~ 667382 (+)
G261700 NA other upstream 462634 252412 ~ 274450 (+)
G262194 NA other downstream 398869 1139352 ~ 1145007 (+)
G262423 NA other downstream 1496406 2241408 ~ 2242965 (+)
G262436 NA other downstream 1968613 2713615 ~ 2714517 (+)
G265391 NA other downstream 5168781 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 5590276 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004617 pank1b coding NC_007123.7 CM002896.2 16953415 ~ 16964840 (+)