CI01000063_01133174_01140538 (PVALB, PVALB3, MGC80184, PVALB4)


Basic Information

Item Value
gene id CI01000063_01133174_01140538
gene name PVALB, PVALB3, MGC80184, PVALB4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1133012 ~ 1140538 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_01133174_01140538.mRNA
ATGGCATTCGCTGGTATTCTGAATGAGGCTGACATCACTGCAGCCCTGCAGGCCTGCCAAGCTGCTGACTCCTTCAAGTACAAGGACTTCTTCGCCAAGGTTGGCCTGACCGCCAAGAGTTCTGATGACATCAAGAAGGCCTTTGCTGTCATTGACCAGGACAAGAGCGGCTTCATTGAGGAGGAAGAGCTCAAGCTGTTCCTGCAGAACTTCTCTGCTGGTGCCAGGGCACTCACTGATGCAGAGACAAAGGCCTTCTTGAAAGCTGGAGACTCTGATGGTGATGGCAAGATTGGAGTTGATGCTGAAGCCATTGAAAATGCTGTCAAAGACTGCCAAGCTCCAGACTCCTTTTGTTATAAAAAGTTCTTCCAACTTTGTGGCTTGAGCCAGAAAAGTCCCCAGGAGGTGAAGGATGTCTTCCGTATCATAGATGAGGATAACAGTGGATTTATTGAGGAGGCTGAGCTCAAAGTTCCAGACTATGGTGTTATCCTGAAAGATGACTGGAGCCCTCAGCTATAAGCACTGCAGCCTCATCTTTCATTTGACTTTTTACACTAGATTTCTTTTCAAAATAAGAATCAGTACATAAAGTAAATGTGCTTGACTTTTGCATATATGTGTCTGTTTTGTTGTCCAGTTCACCCCAAATGACCAATGACAAAACTGTTCAGGGAAAATAAA

Function

symbol description
pvalb4 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in musculature system; myotome; and pectoral fin musculature.
pvalb3 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in hypaxial myotome region and myotome.
pvalb Predicted to enable calcium ion binding activity. Predicted to be involved in cochlea development. Predicted to be located in several cellular components, including cuticular plate; neuronal cell body; and stereocilium. Predicted to be part of protein-containing complex. Predicted to be active in cytoplasm and nucleus.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_01133174_01140538.mRNA True 687 mRNA 0.45 6 1133012 1140538

Neighbor

gene id symbol gene type direction distance location
CI01000063_01115076_01126539 CCZ1 coding downstream 6473 1114647 ~ 1126539 (-)
CI01000063_01103201_01112981 NA coding downstream 20031 1103116 ~ 1112981 (-)
CI01000063_01079985_01087813 EIF2AK1 coding downstream 45199 1079522 ~ 1087813 (-)
CI01000063_01070457_01077403 USP42 coding downstream 55150 1070223 ~ 1077862 (-)
CI01000063_01029007_01032212 NA coding downstream 100800 1028982 ~ 1032212 (-)
CI01000063_01143887_01144418 PVALB3, PVALB2, PRV2 coding upstream 2665 1143203 ~ 1144940 (-)
CI01000063_01170694_01187133 TECPR1, TECPR1A coding upstream 29744 1170282 ~ 1187133 (-)
CI01000063_01188049_01192674 TECPR1, TECPR1A coding upstream 47511 1188049 ~ 1192674 (-)
CI01000063_01200458_01207989 NA coding upstream 59850 1200388 ~ 1207989 (-)
CI01000063_01216041_01217287 NA coding upstream 75177 1215715 ~ 1217563 (-)
G262990 NA non-coding downstream 34880 1097440 ~ 1098132 (-)
G262988 NA non-coding downstream 37389 1095347 ~ 1095623 (-)
G262985 NA non-coding downstream 38299 1093632 ~ 1094713 (-)
G262876 NA non-coding downstream 161231 956722 ~ 971781 (-)
G262970 NA non-coding downstream 179633 953157 ~ 953379 (-)
G262999 NA non-coding upstream 9074 1149612 ~ 1149869 (-)
G263002 NA non-coding upstream 12351 1152889 ~ 1153127 (-)
G263004 NA non-coding upstream 13861 1154399 ~ 1154613 (-)
G262997 NA non-coding upstream 15178 1155716 ~ 1155952 (-)
G263029 NA non-coding upstream 140489 1281027 ~ 1281776 (-)
CI01000063_01669384_01670016 HBAE1 other upstream 528873 1669317 ~ 1672019 (-)
CI01000063_02177769_02178239 NA other upstream 1035901 2177747 ~ 2178395 (-)
CI01000063_02326799_02327290 CBY1 other upstream 1184574 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 1585221 2725759 ~ 2726535 (-)
G265567 NA other upstream 4021956 5183279 ~ 5183287 (-)

Expression


Co-expression Network