CI01000063_01188049_01192674 (TECPR1, TECPR1A)


Basic Information

Item Value
gene id CI01000063_01188049_01192674
gene name TECPR1, TECPR1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1188049 ~ 1192674 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_01188049_01192674.mRNA
ATGTGTTTTGTACCACAAACATTCAAGGAAGCTATGAGTTCAAGTGTGTCACGGATGTGGGCTAAGGCCATGAAAGAGGAAATCGACTCCCTTAAGGAAAATGAAACATTTGCCCTAACTACGCTACCAGAAGCAGGGTGCATCATGCCGAGCTCCCTCCTGTGGGCTGTTGATGTGTACGGGAGGGTTTATAGCCTTTCGACAGCTGGACAGCAGTGGGAACATTGTCGCGATGCCCACTTGGAGTTCAAGCGCGTCACAGCTGTGCAGCAGTGCTGCTGGAGCATTGCCTGTGATCACAACATCTACCTGAATGTCCATGCCAGTGATGTGCCCATCCGCTACCAAGAGGAGACATATGAAAACCAGAGGTGGAACCCTGTCGATGGCTTCTCGGACCGGCTGTTGCCCAGTGACCGCTGGCAGTGGAGTGATGTCACAGGGCTGAAGCACCAGCCTCTGGGTGACTTTCAGCTGCCCTCTGACAACTGGGAGTGGGAGGCGGACTGGTACGTGGATGAAAACTTTGGAGGAGAGACCACAGAAAAAGGGGGATGGACATATGCCATTGATTTTCCAGCCACTTACACAAAAGACAAGAAGTGGAACTCTTGTGTGCGTCGCCGCAGATGGATACGATACAGAAGGTACAAGGCACAGGAAACTTGGGTCAAGATCCCCTCGGAGCAGACTGAGTCTCTTCCTGACCCATTTAATGACATCACTTGTGGTGGTTGGGAGATCACTGAGGAGCCCAGAGGGTGTTTGGCACTGTGGGCGGTCTCTCTGCAGGGAAAGGTGTGGTTCCGGTGTGGCATTAATAACCATAATCCTGAGGGCTCCTATTGGGAGGAGGTGTCCGTACCAGGGGAGGTTGTGCAGATCAGCTGTGGGCCGGGTGACCTGGTGTGGGCCGTCCTGTGGGAGGGTCATCTGCTGGTCAGAGAGGGCATTGGCAGAGATTGTCTCAGGG

Function

symbol description
tecpr1a Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in autophagosome maturation. Predicted to be integral component of membrane. Predicted to be active in autophagosome membrane and lysosomal membrane. Orthologous to human TECPR1 (tectonin beta-propeller repeat containing 1).
tecpr1 Enables phosphatidylinositol-3-phosphate binding activity. Involved in autophagosome maturation. Located in autophagosome membrane; lysosomal membrane; and nucleoplasm.

NR:

description
Zgc:158759

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component

KEGG:

id description
K17988 TECPR1; tectonin beta-propeller repeat-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_01188049_01192674.mRNA True 973 mRNA 0.54 6 1188049 1192674

Neighbor

gene id symbol gene type direction distance location
CI01000063_01170694_01187133 TECPR1, TECPR1A coding downstream 916 1170282 ~ 1187133 (-)
CI01000063_01143887_01144418 PVALB3, PVALB2, PRV2 coding downstream 43109 1143203 ~ 1144940 (-)
CI01000063_01133174_01140538 PVALB, PVALB3, MGC80184, PVALB4 coding downstream 47511 1133012 ~ 1140538 (-)
CI01000063_01115076_01126539 CCZ1 coding downstream 61510 1114647 ~ 1126539 (-)
CI01000063_01103201_01112981 NA coding downstream 75068 1103116 ~ 1112981 (-)
CI01000063_01200458_01207989 NA coding upstream 7714 1200388 ~ 1207989 (-)
CI01000063_01216041_01217287 NA coding upstream 23041 1215715 ~ 1217563 (-)
CI01000063_01228002_01232509 NPTX2B, NPTX2 coding upstream 33799 1226473 ~ 1232993 (-)
CI01000063_01329725_01330246 NA coding upstream 137037 1329711 ~ 1330272 (-)
CI01000063_01473401_01482295 NA coding upstream 280727 1473401 ~ 1482295 (-)
G262997 NA non-coding downstream 32097 1155716 ~ 1155952 (-)
G263004 NA non-coding downstream 33436 1154399 ~ 1154613 (-)
G263002 NA non-coding downstream 34922 1152889 ~ 1153127 (-)
G262999 NA non-coding downstream 38180 1149612 ~ 1149869 (-)
G262990 NA non-coding downstream 89917 1097440 ~ 1098132 (-)
G263029 NA non-coding upstream 88353 1281027 ~ 1281776 (-)
G263021 NA non-coding upstream 118067 1310741 ~ 1329440 (-)
G263071 NA non-coding upstream 143920 1336594 ~ 1336815 (-)
G263081 NA non-coding upstream 180792 1373466 ~ 1373863 (-)
CI01000063_01669384_01670016 HBAE1 other upstream 476737 1669317 ~ 1672019 (-)
CI01000063_02177769_02178239 NA other upstream 983765 2177747 ~ 2178395 (-)
CI01000063_02326799_02327290 CBY1 other upstream 1132438 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 1533085 2725759 ~ 2726535 (-)
G265567 NA other upstream 3969820 5183279 ~ 5183287 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005292 tecpr1a coding NC_007123.7 CM002896.2 17794284 ~ 17810543 (-)