CI01000063_01557732_01560541 (ZDHHC4)


Basic Information

Item Value
gene id CI01000063_01557732_01560541
gene name ZDHHC4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1557653 ~ 1560541 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_01557732_01560541.mRNA
ATGGACTTCCTCACTCTGTTTGGCATTTATGTGGCAGTAGTGCTCACCTGCATTGCTCTGGTTTGTAAGTATTCAGGACATCAGCAGACTCCTCTCGGTCGGCTTTTGGACACATTCACAGGGGTTGTCTCTCCATTGATCCCACGATGTCTCCAAAGCGTTTGCTACAGGACTATGCACAGACTGTTCCATCAGAGGAACAACTGCTTCCTTTACTTGCACCTGTTACTTGAAGTGGTTGTATATGGAGAATTCTCCTATGAGGTCTTTGGCTTCTGTTTGGACATGGGCACAAGTTCAGTCAGCTTGTGCATTCCCTACGTCCTCCTTGCACTGAAGTCCTATCTGTTCTACCTGTGTTGTAGCAGAGACCCAGGCACACTGACAAAGGCAAACCATACTACACAACTGAAGGTCTACCAGTATGATGAAAAACTGTTCCAGCAGGGAGTCAGGTGTTCAACCTGTCAGCTGGTCAAACCTGCCCGATCCAAACACTGTAGGGTTTGCAATCGATGTGTCCAGAGATTCGACCATCATTGTGTATGGGTGAATAACTGCATCGGTGCCCAGAACATCAGATACTTCCTACTGTACCTCCTGAGTGTTTGTGCCATGGCAGGTGATATTGCAGTCCTTACAGCAGACATGTTGCTCCAAACTGTTTTGCGAACTGGACTCCTGCACGCTCACTACATTGATGAGCAGGGTGAGCAACAGCCCGCTGGACCGCTCTTTATCATCCAGCATCTCTTTCTGACGTTTCCACGGATTGTCTTCATGCTGGGCTTCCTGGTGTTTGTCTTTTTCCTCTTGGCGGGTTATTCCATGTTTCACATGTATTTGGCTTTGATAAATCAAACCTCCAATGAGTGGTTTAAAGGAAAAGGTCACAACTGCCAGCATTGCCATCCACACACTGGACACAACTGCCAGACCTCATACAATCCATTTAGAGGTTTCTATCACAGAGGAATCCTTAAAAATCTTGGGGAAATCTTTTGGCCCTTATGTCCTGTTCAGAAAAAGGAAAATTAGAGAAAGTGTTGTTGTTGTTGTTAACAGTGTGTTTGTACTAAACTCTATTTTATTTTTGGTAAATGGATTTTTTAATAAA

Function

symbol description
zdhhc4 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane; endoplasmic reticulum membrane; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC4 (zinc finger DHHC-type palmitoyltransferase 4).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20003 ZDHHC4, SWF1; palmitoyltransferase ZDHHC4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_01557732_01560541.mRNA True 1117 mRNA 0.45 6 1557653 1560541

Neighbor

gene id symbol gene type direction distance location
CI01000063_01554604_01555607 PGP coding downstream 2046 1553980 ~ 1555607 (-)
CI01000063_01548731_01553329 BRICD5 coding downstream 4324 1548447 ~ 1553329 (-)
CI01000063_01541176_01541412 NA coding downstream 15082 1541086 ~ 1542571 (-)
CI01000063_01510130_01526860 NA coding downstream 29881 1510070 ~ 1527772 (-)
CI01000063_01483554_01486900 ATPAF2 coding downstream 70753 1483288 ~ 1486900 (-)
CI01000063_01603848_01622589 NA coding upstream 42933 1603474 ~ 1622786 (-)
CI01000063_01669384_01670016 HBAE1 coding upstream 108776 1669317 ~ 1672019 (-)
CI01000063_01682341_01683245 NA coding upstream 121738 1682279 ~ 1683245 (-)
CI01000063_01802070_01805063 FOXJ1B coding upstream 241161 1801702 ~ 1805475 (-)
CI01000063_01809470_01817028 MGRN1A coding upstream 248854 1809395 ~ 1817028 (-)
G263135 NA non-coding downstream 16861 1540485 ~ 1540792 (-)
G263180 NA non-coding downstream 17454 1539953 ~ 1540199 (-)
G263178 NA non-coding downstream 21532 1535763 ~ 1536121 (-)
G263132 NA non-coding downstream 48080 1509308 ~ 1509573 (-)
G263119 NA non-coding downstream 52703 1500835 ~ 1504950 (-)
G263182 NA non-coding upstream 2509 1563050 ~ 1563521 (-)
G263183 NA non-coding upstream 3262 1563803 ~ 1566540 (-)
G263127 NA non-coding upstream 30160 1590701 ~ 1593377 (-)
G263131 NA non-coding upstream 69286 1629827 ~ 1632556 (-)
G263271 NA non-coding upstream 94481 1655022 ~ 1655367 (-)
CI01000063_02177769_02178239 NA other upstream 615898 2177747 ~ 2178395 (-)
CI01000063_02326799_02327290 CBY1 other upstream 764571 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 1165218 2725759 ~ 2726535 (-)
G265567 NA other upstream 3601953 5183279 ~ 5183287 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location