CI01000063_01802070_01805063 (FOXJ1B)


Basic Information

Item Value
gene id CI01000063_01802070_01805063
gene name FOXJ1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1801702 ~ 1805475 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_01802070_01805063.mRNA
AAAGCCTGCATCTCATTTCTCTCCTATTCATTCGCTTACGAAACAGTAAATGTGGTTCTACATGGCTTTCTCTAAGACAGGATTGGAATGCTACTTTTCACAGTAGATATCAGGACATGTCCGATTTTGTGGATGCGCTCGTTTATCTGCTGCACTTGTTGCACTGAGGCAAACAGGCTGAATCTAACGGACTGAGAGATACTCACCGCTACAGTTCAAACCGACGAGGTTTTCATTTCGCAGGTAGGCATTTAATTTGAGGGATTTAATTGCCTAACCCTGTGGTGGATTATACGCTTATAATAATACACGTTTTTCAGTTACATTTTTATTAGCCGTTATTTTCGAATTTTCAAGCAACGTGTCTGTTTCACAGAACTGTTTCTTCAAAAACACTAACGTCGCGTCCACTATGCCAGTGTTAATGAGTCCTGAGATAGCGAATAAATTCAAAGAGAAATGGATGATGCTTCATCCGGAGGACCAGGACAATGTCAGCGGCTCTGTTCACTTTGACGACAGTCTCACCAGTCTGCACTGGCTGCAGAACTTCTCCATCCTCAGTGCCAATCCCGAGAGGACTCCCAGCTCCGGCTGCCACCCGCAACACCTCTTCTACCACAAAAACCAGCTGGGGGGCACCGACTCGCCCTCCAGTCCGCCTGCCGGAGATACCGCCGCCACAGGGATGCCACAAACACCTGGGAATCCCACAACGTCCTGCAGCAATTTGGCGAATTCATACACGCACCAGCAAGCGGGACACTACATAACGGCGCAAACAAATCCTTCGGAGGAGATCGACTATAAAACAAACCGCCACGTGAAGCCACCGTATTCATACGCCACTCTGATTTGCATGGCAATGCAAGCTAGTAACAAAACCAAAATCACTCTGTCAGCCATTTACAGCTGGATCACTGAGAATTTCTGCTACTACAGATACGCGGAGCCAAGTTGGCAGAATTCAATCCGCCATAACTTGTCCCTAAACAAGTGCTTCATGAAAGTGCCTAGGCAGAAAGATGAGCCAGGAAAAGGAGGCTTTTGGCAAATCGACCCACAGTATGCTGACATGTTCGTCAATGGCGTTTTCAAGCGGCGACGAATGCCTGCCACAAACTTCAATACCCAGAGACAGAGCAAAATGTTATCCTCTCCCAGCTCCTCGTACGGCTCTCAGTGCAACCAGACTGGCCAACAAATGGGAATGGGCCACTTCCAAGGACCTGTCCCGGGAAACAAACGCAAGCAAGTCTTCTCCAAACGAGGCAGCAAGCTGGCCAGAGTCTCCAAAAGCCCTCTGTTAACCACCGACATCAAAACTTCAGACGTACTGAGAGGAGATTTTGACCTGGCGTCTGTTTTTGACGATGTGCTTAGTGGGAATGACAGCACGTTTGAAGATTTGGATATCAACACAGCGCTAAGCTCTCTGGGATGTGAGATGGAGCTATCTTCACAGAACCAGCATGGGTCTGGCTACAGCAATGAGGACGAGCAGGCTTGTGCTTACCTAGAGGCCAACGGCATGATGGGATGCAACATGGAGGACTTTCACCAACAGCATCACCAGCAAGTACAGGTCCATCCGCAATATTATGAGGGAATGTTCTCGGATCAGGTTCACCAGCATCAGCAGCACCCCTGGGAGATTAAAGAGGAAGTCCAAGCCATCCCAGTTTCCCTGGATCATGGCTATGGGCTTTGTGAGGGATTCTTCTCTGAGATGCAGCTATGGGAAAGAGCGGAGTCATATCTGTGAACACGTCTAAATACATATGCACTGACTTTGCTGGTCTGAAGACCTAATGACTTTTGTTTTGCTACATTAGCATAATGAATTACTGAGGATGTGAAAGGTTATATGTAATTATTCTTTGTACTTCTTTTGCATTTTTTAAGAACCTATACTGATTCATTTATAATCACCCCTTATCTTTGAATTCTTGATTTTTTTTTTTTTTTTTGGAAATTTTCTCAAGATGATTAAATATTGCTGTGGGACAAATGTAGTTATTTAGGATAGTGGCATTTTGTTCCTGTATTGATTAATCCATCTAATATATTCATTTTAGTTTACTTGATATTTTAGGCAATGTCATGCTTTATATGAGTCTAACAAAAAATAAA

Function

symbol description
foxj1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cilium assembly and embryonic organ morphogenesis. Predicted to be active in nucleus. Is expressed in several structures, including axis; germ ring; mesoderm; nervous system; and pronephros. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 43. Orthologous to human FOXJ1 (forkhead box J1).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_01802070_01805063.mRNA True 2133 mRNA 0.45 2 1801702 1805475

Neighbor

gene id symbol gene type direction distance location
CI01000063_01682341_01683245 NA coding downstream 118457 1682279 ~ 1683245 (-)
CI01000063_01669384_01670016 HBAE1 coding downstream 129683 1669317 ~ 1672019 (-)
CI01000063_01603848_01622589 NA coding downstream 178916 1603474 ~ 1622786 (-)
CI01000063_01557732_01560541 ZDHHC4 coding downstream 241161 1557653 ~ 1560541 (-)
CI01000063_01554604_01555607 PGP coding downstream 246095 1553980 ~ 1555607 (-)
CI01000063_01809470_01817028 MGRN1A coding upstream 3920 1809395 ~ 1817028 (-)
CI01000063_01856270_01877031 MKL2A, MKL2 coding upstream 50770 1856245 ~ 1877095 (-)
CI01000063_01890725_01899483 ERCC4 coding upstream 84917 1890392 ~ 1899546 (-)
CI01000063_01915989_01944590 CPPED1 coding upstream 109948 1915423 ~ 1944590 (-)
CI01000063_02032344_02033792 NA coding upstream 226053 2031528 ~ 2033999 (-)
G263307 NA non-coding downstream 59170 1742297 ~ 1742532 (-)
G263305 NA non-coding downstream 60697 1740754 ~ 1741005 (-)
G263300 NA non-coding downstream 64932 1733589 ~ 1736770 (-)
G263298 NA non-coding downstream 75183 1726313 ~ 1726519 (-)
G263297 NA non-coding downstream 78377 1723071 ~ 1723325 (-)
G263334 NA non-coding upstream 27115 1832590 ~ 1833051 (-)
G263335 NA non-coding upstream 27599 1833074 ~ 1833377 (-)
G263338 NA non-coding upstream 31721 1837196 ~ 1837408 (-)
G263339 NA non-coding upstream 33185 1838660 ~ 1838865 (-)
G263340 NA non-coding upstream 33816 1839291 ~ 1839603 (-)
CI01000063_02177769_02178239 NA other upstream 370964 2177747 ~ 2178395 (-)
CI01000063_02326799_02327290 CBY1 other upstream 519637 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 920284 2725759 ~ 2726535 (-)
G265567 NA other upstream 3357019 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 3382928 5188403 ~ 5189645 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location