CI01000063_02041246_02172429 (SNX29)


Basic Information

Item Value
gene id CI01000063_02041246_02172429
gene name SNX29
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2041246 ~ 2172429 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_02041246_02172429.mRNA
CTTACAGGCGCACAGCAAAATGACCTGAAAAGACAAAACTTGTTAGAGAGACTTCTTGATGCAGTTAAGCAGTGCCAAATTCGCTTTGGTGGCAGGAAGGAGATTGCCTCAGATTCTGATAGCAGAGTCATATGCCTGTGTGCCCAGTTTGAAGCAGTACTTCAGCACGGCTTGAGGAAGAGTCGCGGTTTAGCCCTTACAGCAGCTGCCATTAAACATGCTGCTGGATTTAGCAGCAAAACTGAAGCAGAGCTGACATTCTGGTTTTATGTGAAGGAGCACCTCAACCGTCATGAGTTGCAGCGCTTCTACTCTCTGCGGAATATCACATCTGAGCTGGGCCGGGGCAGGGCATGGCTTCGTTGTGCCCTGAATGAACACTCGCTAGAGCGTTATCTGCACATGCTGCTTGCAGATAATGCCCGCCTTAGTGCCTTCTATGAAGACTGGGCTTTTGTCCTGGATGAGGAGAGAGCCAGTATGCTGCCCACTATGGCTGCAGGGCTCAATTCCATCCTGTTTGCCATCAACATTGACAACACGGACCTAAATGGCCAGGCCCGCGGGGGGTCGTCTGTCTCCCACCTGCTTAAAGAGTCCACACAGGGCATGAGCAGTTTGTGGAAAGAATCTACTCAAGGTGTCAGCACACTTCTGCGTGAAATTGGTACTGCCACTGCAGTGGTTCCTGGTTTCATCCCTCGCTCGGATGCTCCATCAGACCCACTGCCTGTCTTGCCCCGCAGCACTTCTGCAGATTCCGGTTTAAGAAAAGAGCGTAGACGTAAAAAGAAGATCACAAACATCATCTCTTTTGACGATGACATGGGTGCGGAAGATGAGGACGAGGCTGGCGAGGATGTTGTGAGGAGTCTCAGGAAGAGTACGGGTGGTCACGTAAGTTCCGAGGAGGCTCTGGATCCTCCGGACTCTGCCTCTCCCGTTCATAACGGCCTGACCGAGCCTGGGATTGTGAGCTGGGCTGAAACACCTCCACAGAATGGAGTGCTGCCCGATACCAAGAGCATTGACAATGAGGAGGAGGAAGAGGATGACAGTTATGGAAAAAGTAGGCAGGTGCCCCCAGAAGAGGATCATGGGAATGGGGAGCGGATGGTTGTGGGGAGTTTATCCAGTGTTTCTACATGGAGTCCAAGGCAAGTCATCACAGACAATGACAATGACAACTCGCACATTTTCATACCTCTGGCCTCCAGCGAGCCCTACACACACCAAGCTGGTAGTTCAGTTGAGAATGTTGATTTTCATGGACAGAAGGAGAGCTCAAGCCCACCAACTGACAGTGAAAAACGAAGCCAACTCCAATTTAGCATGGAGCCCGACTCACCGGCACAGATTGCTCCTTTGACCGGTGTTCTGCCGACCCCTGGCCTTCCTGAGTCCATGACCATTGCTGAACTGCGTCAAGCCATTGTGGCCATGATGAACAGGAAAGATGAACTCACTGAGCAGAACACGTCTCTGCGCAGTCTCCTGGATGGAGAGATGGAGCACTCTGCTGGACTCAGGCAGGAGGTGGACAGCTTGAAGAAGAGACTTGCTGAGCTAGAGGAGAGACATGCGGCCAAAGTCCAAGCTCTCATGAGAGAGAATGAGGTTCTGAAGGTTCAGCTGAAGAAGTATGTTGGAGCTGTCCAAATGCTGAAAAGGGAAGGCAGCCAAGGCAATGACGCATTGACCATTCAACGGAATTGTGATGGTCCCCCTCCAGCCCCCCAAAACCGGTCCGTGGCTGATATAGAGGAACTGGCTGCCAACTATGAGCGTAAACTCATCGAGGTTGCTGAGATGCACGGAGAGCTGATTGAGTTTAACGAGAGGCTGTACCGCTCCCTCATGGCCAAAGACAACCTGATCGGACAGATGAGGCAGGAACTCATCGACCTGCGTGGCCCAGTGCCAGGGGACCTGAGCCAGACCTCTGACGATCCCAGCCTATCTGACTTTGAGACAACTCAACGTGCCCTTGTCAACGTGTGGATCCCCTCTGTGTTCCTTCAAGGTCGGGCTGCCAACGCCTATCATGTATATCAGGTAGTGTACATTCGAATTCTGGACAATGAGTGGAATGTGTACCGGCGCTATGCTGAGTTCAGGACGCTGCACAATTACCTGCGGCCGCAATTCCCACAAGTCGACACGTTCAATTTCCCACCTAAAAAAGCCATCGGCAACAAGGATGCCAAGTTTGTAGAGGAGAGGAGGAAACAGCTGCAGTCGTACCTGCGTATGGTGATGAATAAACTGATCCAGACACTGCCTGAATTCACTGCCCAGCCCACAAAGGAGACCTTACTGCATTTACTGCCTTTCTGCCAGGACAGCCCGACGGCCAATGAAAGTGGAGCCAAAACTGCCCGATCCAAAGCCTCCAGCCGCTTTCCCAGACTAGGCCGCAACTCGGGCCGTGAATCCCGGAATCCTGAACCCCAAAGCGGTGACCTT

Function

symbol description
snx29 Predicted to enable phosphatidylinositol binding activity. Is expressed in brain; gut; and liver. Orthologous to human SNX29 (sorting nexin 29).

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17935 SNX29; sorting nexin-29

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_02041246_02172429.mRNA True 2466 mRNA 0.52 20 2041246 2172429

Neighbor

gene id symbol gene type direction distance location
CI01000063_02032344_02033792 NA coding downstream 7247 2031528 ~ 2033999 (-)
CI01000063_01915989_01944590 CPPED1 coding downstream 96656 1915423 ~ 1944590 (-)
CI01000063_01890725_01899483 ERCC4 coding downstream 141700 1890392 ~ 1899546 (-)
CI01000063_01856270_01877031 MKL2A, MKL2 coding downstream 164151 1856245 ~ 1877095 (-)
CI01000063_01809470_01817028 MGRN1A coding downstream 224218 1809395 ~ 1817028 (-)
CI01000063_02174216_02175916 TNFRSF17 coding upstream 1484 2173913 ~ 2176162 (-)
CI01000063_02177769_02178239 NA coding upstream 5318 2177747 ~ 2178395 (-)
CI01000063_02180702_02195010 GSPT1, GSPT1L coding upstream 8255 2180684 ~ 2195350 (-)
CI01000063_02195608_02203412 DMC1 coding upstream 23150 2195579 ~ 2204155 (-)
CI01000063_02212324_02222103 TMEM184B, TMEM184B.L, TMEM184BA coding upstream 39793 2212222 ~ 2223666 (-)
G263405 NA non-coding downstream 20644 2020363 ~ 2020602 (-)
G263394 NA non-coding downstream 45142 1995766 ~ 1996104 (-)
G263260 NA non-coding downstream 52392 1949847 ~ 1988854 (-)
G263356 NA non-coding downstream 130876 1910148 ~ 1910370 (-)
G263350 NA non-coding downstream 139705 1901329 ~ 1901541 (-)
G263201 NA non-coding upstream 180753 2353182 ~ 2356169 (-)
G263207 NA non-coding upstream 194592 2367021 ~ 2369202 (-)
G263430 NA non-coding upstream 207983 2380412 ~ 2381248 (-)
G263431 NA non-coding upstream 208917 2381346 ~ 2383423 (-)
CI01000063_02416343_02425379 NA non-coding upstream 252481 2416273 ~ 2425636 (-)
CI01000063_01669384_01670016 HBAE1 other downstream 371170 1669317 ~ 1672019 (-)
CI01000063_02326799_02327290 CBY1 other upstream 152683 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 553330 2725759 ~ 2726535 (-)
G265567 NA other upstream 2990065 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 3015974 5188403 ~ 5189645 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004669 snx29 coding NC_007123.7 CM002896.2 19408373 ~ 19659256 (+)
bowfin (Amia calva) AMCG00018345 snx29,LOC107554010 coding CM030135.1 CM030135.1 8718740 ~ 8731928 (+)