CI01000063_02174216_02175916 (TNFRSF17)


Basic Information

Item Value
gene id CI01000063_02174216_02175916
gene name TNFRSF17
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2173913 ~ 2176162 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_02174216_02175916.mRNA
AGTATGTAAACAACATGTAACGCTTGGGATTTATCGGTGTAGTTTACATTAGAAATTTGGTTGATGAGGATATTTTAGTTTTTTGTCATGAGAAAATGTGACTAAAATTTAAACTGATCCCAAATGTAAAAGGCTAAAGTGTAGATTGCTCAGGGACATCCCCTTCTTAAGACATATTTACATACTGGGCTTGATAAAATGTTGGCTGTTGTGTGGGTTCAGTGACTTCCAACACCTCAGTGGAAGATGCTTCTCTTTATATGGCTGCTTTACATGATTATTTATGCTGAGGGAAAATGTGCAAAGAATTATTATTACGATGGACTTCTTGAGGAGTGTCAACATTGTTCCATTAGATGCAACTCCCCACCAAATATTTGCAATACATTTTGTACCTCAATACCAGAAAATGAAGTTGAAAAGAATCAAAATATACGTTTCATTTTGATCGTGTTTTTTGTGTTCCTGGGAGCTTTCACTGCACTGACCATTATTCTGCGAGTTATACGCAGAAAAACCTGTAAGCCCATCATCATGAACAAAGCGATAGGTCAAGAACAAAAGACATCTGACAGCGAGAGAGGCTCGGATGTCACAGAGCAATCTGAAGCTACGACTGATTTGTCAGATGGACTGAATCAGCATCACTACAACTCCAACCTGCCTCTTCCTTCCACTGAGGAAGGCACCACATTGCTGGTTACCACAAAGACAGTACAAGCTTACCAGTGTACATCTGTCATATACGGAGGAGATCACATGGAACTTGTATAACAGCAGCAGACTCTGGTGCACTTGTAGCACATTATCTCACCATTACTCTGTGCAGACTGGATAAAATTCTCATTGTAATTTGAAATGGACTGCTGGATACACTAATAATGAAAACAGGACTTGAACACAGGATGGAATCTGACTGTCAAAAGTGAACATCTCGGTGTTATTTAGGTGTAAGAATCATTTGTGAATGTAAACTATTTTCAACATGCTTTGTCCAAAAGGTCTGAGTTTCACTTCTACACATTTGTATCAATGCAAAGCCAGTACAGATTTATGTTGTATCTTTGTTAAATTAAA

Function

symbol description
tnfrsf17 Predicted to enable signaling receptor activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within lymphocyte homeostasis. Predicted to be located in plasma membrane. Implicated in colon carcinoma and multiple myeloma.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_02174216_02175916.mRNA True 1077 mRNA 0.38 3 2173913 2176162

Neighbor

gene id symbol gene type direction distance location
CI01000063_02041246_02172429 SNX29 coding downstream 1484 2041246 ~ 2172429 (-)
CI01000063_02032344_02033792 NA coding downstream 139914 2031528 ~ 2033999 (-)
CI01000063_01915989_01944590 CPPED1 coding downstream 229323 1915423 ~ 1944590 (-)
CI01000063_01890725_01899483 ERCC4 coding downstream 274367 1890392 ~ 1899546 (-)
CI01000063_01856270_01877031 MKL2A, MKL2 coding downstream 296818 1856245 ~ 1877095 (-)
CI01000063_02177769_02178239 NA coding upstream 1585 2177747 ~ 2178395 (-)
CI01000063_02180702_02195010 GSPT1, GSPT1L coding upstream 4522 2180684 ~ 2195350 (-)
CI01000063_02195608_02203412 DMC1 coding upstream 19417 2195579 ~ 2204155 (-)
CI01000063_02212324_02222103 TMEM184B, TMEM184B.L, TMEM184BA coding upstream 36060 2212222 ~ 2223666 (-)
CI01000063_02225053_02232182 CSNK1E coding upstream 48725 2224887 ~ 2232182 (-)
G263405 NA non-coding downstream 153311 2020363 ~ 2020602 (-)
G263394 NA non-coding downstream 177809 1995766 ~ 1996104 (-)
G263260 NA non-coding downstream 185059 1949847 ~ 1988854 (-)
G263356 NA non-coding downstream 263543 1910148 ~ 1910370 (-)
G263350 NA non-coding downstream 272372 1901329 ~ 1901541 (-)
G263201 NA non-coding upstream 177020 2353182 ~ 2356169 (-)
G263207 NA non-coding upstream 190859 2367021 ~ 2369202 (-)
G263430 NA non-coding upstream 204250 2380412 ~ 2381248 (-)
G263431 NA non-coding upstream 205184 2381346 ~ 2383423 (-)
CI01000063_02416343_02425379 NA non-coding upstream 248748 2416273 ~ 2425636 (-)
CI01000063_01669384_01670016 HBAE1 other downstream 503837 1669317 ~ 1672019 (-)
CI01000063_02326799_02327290 CBY1 other upstream 148950 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 549597 2725759 ~ 2726535 (-)
G265567 NA other upstream 2986332 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 3012241 5188403 ~ 5189645 (-)

Expression


Co-expression Network