CI01000063_02195608_02203412 (DMC1)


Basic Information

Item Value
gene id CI01000063_02195608_02203412
gene name DMC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2195579 ~ 2204155 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_02195608_02203412.mRNA
ATGATTACAATACAAACAAACATTTATGAGATCATATTTGTGATCAGTGGGCAACACCCTTATTTTTGAATAATTAACTAGGCTAACTGATTCATTGCAATTACAAATTATTGTTACATTAAAAAAAAATTAACCAAAGTAAAAGGAAATGGTTTAGCAATTATTTTTCCCACAAAATTGCCTGTTACTAAAAAAGCTGCTGATAATGTTAATGTTGCCCATTGATTACAACTGTGACCACAAATGAAACATACTTTCACTAACTTAAAAACGCCTTTTGAAAAGGCATGTTTGTTTCATCCAAGTATTAATGTAAACCAAATGTTTTACTTTGCATCAAACAAAAAAAAAATAATCTGTTGATTCCAAACTCCCATATTAGGCTTTTTTTGGTGAAGTGACGTGTAAACTACGTGATTTGGGTTCCTCTTCTGCTTCATATTAATAAAACCAGGGGGAATTGTGTCAGTGAGCGCAATCTTCCACTATTTCATCGTCCACTACTACGCAATCATGAACTGCAGTAAGACCTCCCTGTCGATAGGTGTCTCAAAATATGCCGTTGTGCTTCCTTACAAGGAACCGGGGGAAGTACATCCGTCTCACATGTAACCGAAGTGACCTCAGGTTTCAATGCGTGCTCTTTGAATCTAAATCATTGTGAAGCTGTAAAACACTGTTGTGGTCTTTTCACAATTATAATTTAAAGCTTATAGTTGAAATTGACTTACGTCATATTTTAAATGGCTGCCATCCAGGAGCTCTCTCCAGACTCTGGCCGTGTGGAAACACGACCGCCCGAAGACGAGATCGAGGGAGATGATGAAGATGAAGAGCTGGATGAAACATTGTTGGAGAGGTTGTGGGGTCTCACAGAGATGTTTCCAGAATCACTGCGAACAACAGCTGAAGTTTCTGCACAGTGTTCGCTATCTGTAGCCAAAAAACTTTACAGAAATGTTAAAACGTTTAGAAATGGTTCTCTACCAACAGTGTCTTTTACAGATGCGCGGCGCGCGCAAGTGTCAAATCAACGCGAGATCACTGACTTGAACAGATTCTGTCAGCTTTCCCTGAGGAATAAACGTGAGAACATGGCTGACATTAAGAAACTGAAGTCTGTAGGGATTTGTACTGTGAAAGGCATCCAGATGACTACACGCCGTGCTCTCTGTAATGTAAAGGGACTGTCTGAGGCTAAAGTGGACAAAATAAAGGAAGCTGCTGGAAAGTTGCTGACATGTGGATTTCAGACAGCATCTGAATACATTATAAAAAGGAAGCAAGTGTTCCACATCACAACTGGCAGTTTGGAGTTTGAAATTCAGAACTGGAAAGACCCAACTCGCTCACACACTGTGTGTCGGCCTGAGAGACTGAAGGACATAGCTGACAGATTCAATGTGGATCATGAAGCTGTACTGGATAATGTGCTATATGCACGTGCATATACGAGTGAGCATCAGATGGAATTATTAGACTTTGTTGCAGCCAAGTGTCATGAGGAAGGAGGTGTCTTCAAGCTTCTGATAATAGACTCAATTATGGCTCTGTTCCGGGTGGACTTCTCTGGAAGAGGCGAGCTGGCTGAGAGACAGCAAAAGCTTGCACAAATGCTTTCCAGACTGCAGAAGATCTCTGAAGAGTACAACGTTGCAGTGTTTGTTACCAACCAAATGACTGCAGATCCAGGAGCTGGAATGACATTTCAAGCAGATCCCAAAAAGCCCATTGGAGGACACATACTGGCGCATGCCTCCACCACACGCATCAGCTTGAGGAAAGGACGTGCTGAGTTGAGAATTGCCAAAATATTTGATAGCCCAGACATGCCAGAAAATGAGGCTACTTTTGCCATCATGGCTGGAGGAATAACAGATGCCAAAGACTAAAAATCTACACAGAAAGCATGTTACATAAA

Function

symbol description
dmc1 Predicted to enable DNA binding activity and catalytic activity, acting on DNA. Predicted to be involved in DNA recombination and chromosome organization involved in meiotic cell cycle. Predicted to act upstream of or within DNA repair and meiotic cell cycle. Predicted to be located in nucleus. Predicted to be active in condensed nuclear chromosome. Is expressed in ovary and testis. Orthologous to human DMC1 (DNA meiotic recombinase 1).

GO:

id name namespace
GO:0000730 DNA recombinase assembly biological_process

KEGG:

id description
K10872 DMC1; meiotic recombination protein DMC1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_02195608_02203412.mRNA True 1921 mRNA 0.41 13 2195579 2204155

Neighbor

gene id symbol gene type direction distance location
CI01000063_02180702_02195010 GSPT1, GSPT1L coding downstream 229 2180684 ~ 2195350 (-)
CI01000063_02177769_02178239 NA coding downstream 17184 2177747 ~ 2178395 (-)
CI01000063_02174216_02175916 TNFRSF17 coding downstream 19417 2173913 ~ 2176162 (-)
CI01000063_02041246_02172429 SNX29 coding downstream 23150 2041246 ~ 2172429 (-)
CI01000063_02032344_02033792 NA coding downstream 161580 2031528 ~ 2033999 (-)
CI01000063_02212324_02222103 TMEM184B, TMEM184B.L, TMEM184BA coding upstream 8067 2212222 ~ 2223666 (-)
CI01000063_02225053_02232182 CSNK1E coding upstream 20732 2224887 ~ 2232182 (-)
CI01000063_02234891_02253083 NA coding upstream 29458 2233613 ~ 2253083 (-)
CI01000063_02293142_02305535 SH3BP1 coding upstream 88038 2292193 ~ 2305535 (-)
CI01000063_02317828_02320348 NA coding upstream 113206 2317361 ~ 2320348 (-)
G263405 NA non-coding downstream 174977 2020363 ~ 2020602 (-)
G263394 NA non-coding downstream 199475 1995766 ~ 1996104 (-)
G263260 NA non-coding downstream 206725 1949847 ~ 1988854 (-)
G263356 NA non-coding downstream 285209 1910148 ~ 1910370 (-)
G263350 NA non-coding downstream 294038 1901329 ~ 1901541 (-)
G263201 NA non-coding upstream 149027 2353182 ~ 2356169 (-)
G263207 NA non-coding upstream 162866 2367021 ~ 2369202 (-)
G263430 NA non-coding upstream 176257 2380412 ~ 2381248 (-)
G263431 NA non-coding upstream 177191 2381346 ~ 2383423 (-)
CI01000063_02416343_02425379 NA non-coding upstream 220755 2416273 ~ 2425636 (-)
CI01000063_01669384_01670016 HBAE1 other downstream 525503 1669317 ~ 1672019 (-)
CI01000063_02326799_02327290 CBY1 other upstream 120957 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 521604 2725759 ~ 2726535 (-)
G265567 NA other upstream 2958339 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 2984248 5188403 ~ 5189645 (-)
CI01000063_05616519_05617045 NA other upstream 3342546 5615806 ~ 5617112 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004664 dmc1 coding NC_007123.7 CM002896.2 19356623 ~ 19362186 (+)