CI01000063_02416343_02425379


Basic Information

Item Value
gene id CI01000063_02416343_02425379
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2416273 ~ 2425636 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_02416343_02425379.mRNA
AGACTTTAATCGGATGGAAATTCGCTAGCTCTTCGACCATTACCTGTCATATTGCTGAAAACTATGTTATATTTGACTAAGGTTTGGTTATAGAGTAGATAGTATTAGCAATTTTAGTAGTCAGAAAGTAAACTTCTGACTCGTCTGATTCAGCGTGAAACATGAATCTATTTACACAGAGATTTATTTTGTGCGTCCTAACGGCGACCTTCGTAAAGGCTCAGCATGTTCAGAGAGCCACCGTATATTGGGATGCTGTTCAGAGGTCTGTGGTGCTGAAAGAGGATGCAATGGAAGAGGACGGAGATGCATTTGGTTATTTCAATGATAGTTTATCTGTTTCTGGATGGGGAGTGCTGGAAGTGCAGGCTGGTTATGGAGAATCCCAGGAGAACGATGAGATTACATACTTCTTGGCCGGATACCTTGAAGGATACCTTACAGCCTCTGAGCAGGACTCATGGACAAGAACACAAGTGAAATTAAATGGGAAAAGTGATCCCTTGTGGCATCATGTAGGTCTTCTAGTGGCTCAGGTGGATGGATTGCATGCCGGGGCAGCACACTGGGCCAAAAGTAGACAGAAAAAGCCTCTGTCCATGTTTGCGGTTCAATTCCTCAATGGTATTGGAGATTTGTTAGACTTAATCCCTGCACTCAAAAGACGTTCCAACTCTTCTTCGGACTCCTTCAGAATGCCAGGCATGAGTCACTGCTCTGCTCTCATTAAGTTGTTACCTGGCTATGAGAATCTGTTGCTTGGTCACTCCAGCTGGTATACCTATGCAGCCAGCATGAGAATCTACAAGCACTGGGACTTTAGACTGAAAAATAAACATAATTGCACAAGCAGACTGTCCTTTAGCAGCTACCCTGGGACCTTGTCATCTCTGGATGACTTTTATTTGCTGGGAACGGGGTTGTTTGTAACTCAGACAACAAACAACGTGTTCAACACCTCTCTGTTCTCCCTGGTGTCCCCAGAGGCTTTGCTTGCCTGGCAGAGAGTGCGTGTAGCACATGCGCTGGCCTGCACAGGGAAGCAATGGGCACAAATATTTTCCAAGCACAATTCGGGGACCTACAATAACCAGTATATGGTGGTGGACCTGAAAAGAGTTTCACTTGGAAAGCAGATTGAAGAATGGAGTCTGACTGTTGTGGAGCAGATTCCTGGTTTGGTGGTGTACTCAGATCAGTCACAAGCGCTGCGTCAGGGTTACTGGGCATCCTACAACATCCCTTTCCACTTAGACATTTACCGAATGAGTGGTTATGGTGTGATGTGGAAAAAGCATGGTGAAGACTTCTCATATGACCTCTGTCCACGTGCTAAGATTTTCCGCAGGGACCAGGGAAAAGTCACTAATCTGGATACCTTGAAATACATTATGAGGTACAATGATTACAGAAAAGACCCATATTCAAATAAGCACCCTTGTAAATCCATCTGCTGCCGTAATGACCTGAGGCTCCGACAACCTCATCCAGGGGGATGTTATGATACTAAGGTTACAGATTATCACATGGCCCAGATGTTTACGGCCGAAGCTGTGAACGGACCCACTACTCAGGATGGTCTTCCACCTTTCTCTTGGAGCCGTTTCAATCGGACAGCTCATCAGGGGCTCCCTCAGACCTACAACTTCTCATTCATCACCATTCAGCCCCTTCTTTTTGGTTCCAGAGATCAAGACAAGACTGATAGTAGTCTGATACAGTGTATGAACAGCAGTCTAGAGGATACAGATCCAAGACTTGAAAATGATTTAATCGACTTTGCATCAGATATTTACAGGCAGCTTTACAAAGTCATTGGGTACATTTTTGCCGCATAATACTTTTTGTGAGATTGAATGCATAATACTTCCAATCAATACTTCCAATGCTGGACATTTATGCAATAAA
>TU299026
CTGGGGTGGAAATCTTTTAAATGTTTCTTAGCGATCCAACAGGTGTTAGCTAAATGTAGGCATATAAACATAAGGAAACGATGCGAACCAGTATTCAGACTTTAATCGGATGGAAATTCGCTAGCTCTTCGACCATTACCTGTCATATTGCTGAAAACTATGTTATATTTGACTAAGGTTTGGTTATAGAGTAGATAGTATTAGCAATTTTAGTAGTCAGAAAGTAAACTTCTGACTCGTCTGATTCAGCGTGAAACATGAATCTATTTACACAGAGATTTATTTTGTGCGTCCTAACGGCGACCTTCGTAAAGGCTCAGCATGTTCAGAGAGCCACCGTATATTGGGATGCTGTTCAGAGGTCTGTGGTGCTGAAAGAGGATGCAATGGAAGAGGACGGAGATGCATTTGGTTATTTCAATGATAGTTTATCTGTTTCTGGATGGGGAGTGCTGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_02416343_02425379.mRNA False 1908 mRNA 0.44 10 2416273 2425540
TU299026 True 456 lncRNA 0.40 2 2424910 2425636

Neighbor

gene id symbol gene type direction distance location
CI01000063_02404812_02415053 KCTD17, KCD17 coding downstream 1220 2404142 ~ 2415053 (-)
CI01000063_02357993_02360597 PHF5A, BRAFLDRAFT_57503 coding downstream 55676 2357926 ~ 2360597 (-)
CI01000063_02326799_02327290 CBY1 coding downstream 88983 2326741 ~ 2327309 (-)
CI01000063_02321620_02324262 NA coding downstream 91708 2321544 ~ 2324565 (-)
CI01000063_02317828_02320348 NA coding downstream 95925 2317361 ~ 2320348 (-)
CI01000063_02444203_02454140 L3MBTL2 coding upstream 18609 2444149 ~ 2454281 (-)
CI01000063_02496694_02509735 JOSD1 coding upstream 70472 2496012 ~ 2509735 (-)
CI01000063_02512138_02519529 XRCC6 coding upstream 86392 2511932 ~ 2519537 (-)
CI01000063_02580025_02597121 MKL1B coding upstream 154337 2579877 ~ 2597249 (-)
CI01000063_02621471_02632801 RGS9B, RGS9 coding upstream 195111 2620651 ~ 2632801 (-)
G263431 NA non-coding downstream 32850 2381346 ~ 2383423 (-)
G263430 NA non-coding downstream 35025 2380412 ~ 2381248 (-)
G263207 NA non-coding downstream 47071 2367021 ~ 2369202 (-)
G263201 NA non-coding downstream 60104 2353182 ~ 2356169 (-)
G263405 NA non-coding downstream 395671 2020363 ~ 2020602 (-)
G263250 NA non-coding upstream 5837 2431377 ~ 2432091 (-)
G263442 NA non-coding upstream 9560 2435100 ~ 2435311 (-)
G263443 NA non-coding upstream 9971 2435511 ~ 2435757 (-)
G263444 NA non-coding upstream 10566 2436106 ~ 2436318 (-)
G263447 NA non-coding upstream 11932 2437472 ~ 2437811 (-)
CI01000063_02177769_02178239 NA other downstream 237937 2177747 ~ 2178395 (-)
CI01000063_01669384_01670016 HBAE1 other downstream 746197 1669317 ~ 1672019 (-)
CI01000063_02725759_02726399 NA other upstream 300219 2725759 ~ 2726535 (-)
G265567 NA other upstream 2736954 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 2762863 5188403 ~ 5189645 (-)
CI01000063_05616519_05617045 NA other upstream 3121161 5615806 ~ 5617112 (-)
G265976 NA other upstream 3862618 6283058 ~ 6290946 (-)

Expression


Co-expression Network