CI01000063_02496694_02509735 (JOSD1)


Basic Information

Item Value
gene id CI01000063_02496694_02509735
gene name JOSD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2496012 ~ 2509735 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_02496694_02509735.mRNA
GCTCTCTCCTAGCACTTTGGTCACACCCCACAAGAAAAACATGCTGGGTAATGGTAACTATGATGTGAATGTCATCATGGCTGCATTGCAGACCCGTGGGTTTGAGGCTGTTTGGTGGGACAAGAGAAGGGATGTTGGCAGCATTGCACTGCCGAATGTCACTGGTTTCATTTTGAATGTGCCATCCAATCTGCGCTGGGGGCCGTTGCGACTGCCCCTCAAGCGGCAGCACTGGATTGGAGTTCGAGAAGTGGGAGGAGTCTACTATAACTTGGACTCCAAACTGCGCAGTCCTCATGCTATCGGAACAGCTGATGAACTGAGCTGTCATTCTGATAATTTCGCAGGAAGTTCTTGCGTCACCAGCTTCGAGGGAAGAACTGTGAACTCCTATTGGTCGTGCCAGAGGAGGTGGAAGTCCACCAGACGTGGAGAGCTTGTCAGGAGGGGAGCCTGGAGTCCAACCACTGAATCAGAGGCAATGACAATATCTCCTATATCTGAGGACTGGAGTCCAGTTATGGGCCCAGAGGAGGTAACTGTGACAGATATCACCATCAACTCACTGACTGTGACTTTTAGAGAGGCCTTCGTAGCAAGGGGGTTCTTCAGGAGCTGGGAGCTGGAGATCTGACATTACAGAGACTGAGTATGTTGTGAGCGAGGGGGAAAGAGAATCGGTACATCCTCTTTTTTTTTTTCCTTTTTTGCTTTGATTATGCGCTTGCACATCTTCCACCACTGTTTCAGACTACATTTATTTGCACTATTAGTTCTAATCAAGTTAAAACCTTTCAAAATGTTTCAAGATTGTGATTGCAATCATTACAATACTGATAGTATTATGAAGTTTTGAAGTTGTATTGGCCATGAAACAAATCACACATCAAGCTAGTTTCTCTGATACTGATTTTGCCATGTTTTGTAGTTTACAGATTCAACTAGCCGAGATAAGCTTGATTTGGTCTGGTCATGTACTTGCATAATGCTAGTACAGAGTAATTAGCACAATTAAAAATTCTGAAAAGCCAAGCTGTAACAAATATGTCCATACATTTACACTTTAGATATATGTATACATGATATGCTTGGTAAACACGTATATATTGACTTCCAATTTAAATTGCACACCTCATATGCAGTAAATTAGAATTAGTGGCCTCCCTATACTTAAAATATGTGAAATACAACTATGGAAATGCATTTCAACACTTTGTGTGCCATCTTTGAGACTTAAACAATATTGTGGTGTTAAAAAGTTTTATTTTTCATTGCACAATGTTCTACTTTTAATGTAATTGTGTGTATGAAATAAA

Function

symbol description
josd1 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Orthologous to human JOSD1 (Josephin domain containing 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_02496694_02509735.mRNA True 1316 mRNA 0.41 4 2496012 2509735

Neighbor

gene id symbol gene type direction distance location
CI01000063_02444203_02454140 L3MBTL2 coding downstream 41731 2444149 ~ 2454281 (-)
CI01000063_02416343_02425379 NA coding downstream 70472 2416273 ~ 2425636 (-)
CI01000063_02404812_02415053 KCTD17, KCD17 coding downstream 80959 2404142 ~ 2415053 (-)
CI01000063_02357993_02360597 PHF5A, BRAFLDRAFT_57503 coding downstream 135415 2357926 ~ 2360597 (-)
CI01000063_02326799_02327290 CBY1 coding downstream 168722 2326741 ~ 2327309 (-)
CI01000063_02512138_02519529 XRCC6 coding upstream 2197 2511932 ~ 2519537 (-)
CI01000063_02580025_02597121 MKL1B coding upstream 70142 2579877 ~ 2597249 (-)
CI01000063_02621471_02632801 RGS9B, RGS9 coding upstream 110916 2620651 ~ 2632801 (-)
CI01000063_02634558_02636087 NA coding upstream 124823 2634558 ~ 2636391 (-)
CI01000063_02656350_02661590 SLC16A6A coding upstream 146610 2656345 ~ 2661800 (-)
G263265 NA non-coding downstream 1555 2483834 ~ 2494457 (-)
G263257 NA non-coding downstream 28137 2460161 ~ 2467875 (-)
G263451 NA non-coding downstream 38124 2457689 ~ 2457888 (-)
G263449 NA non-coding downstream 54893 2440702 ~ 2441119 (-)
G263448 NA non-coding downstream 57125 2438400 ~ 2438887 (-)
G263458 NA non-coding upstream 5083 2514818 ~ 2515086 (-)
G263491 NA non-coding upstream 178618 2688353 ~ 2688754 (-)
CI01000063_02707551_02721566 SNF8 non-coding upstream 209440 2706964 ~ 2721582 (-)
G263495 NA non-coding upstream 220452 2730187 ~ 2730387 (-)
G263499 NA non-coding upstream 223084 2732819 ~ 2734736 (-)
CI01000063_02177769_02178239 NA other downstream 317676 2177747 ~ 2178395 (-)
CI01000063_01669384_01670016 HBAE1 other downstream 825936 1669317 ~ 1672019 (-)
CI01000063_02725759_02726399 NA other upstream 216024 2725759 ~ 2726535 (-)
G265567 NA other upstream 2652759 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 2678668 5188403 ~ 5189645 (-)
CI01000063_05616519_05617045 NA other upstream 3036966 5615806 ~ 5617112 (-)
G265976 NA other upstream 3778423 6283058 ~ 6290946 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004650 josd1 coding NC_007123.7 CM002896.2 18906407 ~ 18915531 (+)