CI01000063_03649864_03661903 (WNT3)


Basic Information

Item Value
gene id CI01000063_03649864_03661903
gene name WNT3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3649864 ~ 3661939 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_03649864_03661903.mRNA
GTCCCTGGCCCTTGGGCAGCAGTACTCATCCATAGGATCACAACCCATCCTGTGTGGCTCCATACCTGGCTTGGTGCCAAAACAACTGCGGTTCTGCCGCAATTACATTGAGATCATGCCCAGCGTAGCGGAGGGAGTCAAACTGGGAATCCAGGAATGTCAGCACCAGTTCCGTGGCCGCAGGTGGAACTGCACCACTATCAAGGACAATCTAGCCATATTTGGACCAGTACTTGATAAAGGAGGTGGGGGGGTCACTCCTTTTTGGGAATGCCAGCCCCTGCTCTGGGCAGCACTGAACTGGGCTATGGGGTGCGGGGTGCTGGGCCCTTTTGTGTGGGTAATACGGTGTGACAACACAGAGACAAAGGCGGATTCATGGACCCAGCAGGTAGCGGGAGCTGCGCTCTTCTTGGCCCTTGGCCAGGGCTCCTGGGGCCCAGAGCTCACAGTTCTCTGTTGTGGTGAACCCAGCTGGGCCTGCCAGAACCAACTGGGCCTCCTTCTGGCTGCAAATCCAGAGAGACCAAGAGAACTGGTGAGCCACACCACAAGAGAATCTGCATTTGTTCATGCAATTGCCTCAGCTGGAGTGGCGTTTGCAGTGACCCGTTCGTGCGCAGAGGGGACCTCCACAATGTGCGGCTGTGACTCCCACCATAAAGGCCCGCCGGGAGAGGGATGGAAGTGGGGTGGTTGCAGTGAAGATGCTGAGTTTGGGGTTCTGGTGTCTCGAGAGTTTGCCGACGCTCGTGAGAACCGACCAGATGCCCGGAGTGCCATGAACAGGCACAACAATGAGGCAGGACGGATGACTATCCTGGAAAACATGCACCTTCGCTGTAAGTGCCATGGACTGTCAGGCAGCTGTGAAGTGAAGACCTGCTGGTGGGCGCAGCCTGACTTCAGGCTGTTGGGGGACTACCTGAAAGACAAGTACGACAGCGCCTCCGAGATGGTGGTGGAGAAACACAGGGAGTCCAGAGGCTGGGTGGAAACACTACGTGCCAAATACGCCTTCTTCAAACACCCCACCGAGCGAGACCTGGTGTACTACGAGGGCTCTCCCAACTTCTGCGAGCCAAACCCGGAGACGGGTTCATTTGGTACCCGTGACCGCGTCTGCAACGTGTCGTCGCACGGTATTGAGGGCTGCGACTTGCTGTGCTGCGGCCGTGGCCATAACACACGGACAGAAAAGCGTAAGGAGAAATGCCACTGCATCTTCCACTGGTGCTGCTACGTCAGCTGCCAGGAGTGTGTGAGGGTCTACGATGTGCACACGTGTAAATAAGTGCAGGAGGTGGAGGAAGAAAAGGACAAGTGGACA

Function

symbol description
wnt3 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within cloaca development and thalamus development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including basal plate midbrain region; brain; midbrain hindbrain boundary neural tube; posterior neural tube; and presumptive diencephalon. Human ortholog(s) of this gene implicated in tetraamelia syndrome 1. Orthologous to human WNT3 (Wnt family member 3).

GO:

id name namespace
GO:0060173 limb development biological_process

KEGG:

id description
K00312 WNT3; wingless-type MMTV integration site family, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_03649864_03661903.mRNA True 1330 mRNA 0.57 5 3649864 3661939

Neighbor

gene id symbol gene type direction distance location
CI01000063_03369570_03370696 NA coding upstream 278575 3369026 ~ 3372142 (+)
CI01000063_03333320_03353312 NA coding upstream 296279 3333320 ~ 3353585 (+)
CI01000063_03315604_03323945 NA coding upstream 325919 3315604 ~ 3323945 (+)
CI01000063_03307922_03312636 NA coding upstream 337057 3307922 ~ 3312807 (+)
CI01000063_03213632_03233822 CAR10, CA10 coding upstream 415571 3213632 ~ 3234293 (+)
CI01000063_03722032_03737642 HDLBP, HDLBPB coding downstream 58439 3720378 ~ 3737930 (+)
CI01000063_03808559_03820963 POLR2A coding downstream 146336 3808275 ~ 3821730 (+)
CI01000063_03832086_03844644 CAPGB coding downstream 170147 3832086 ~ 3844644 (+)
CI01000063_03848184_03856699 NA coding downstream 185233 3847172 ~ 3856705 (+)
CI01000063_03868669_03878824 MFSD8 coding downstream 205658 3867597 ~ 3879843 (+)
G263945 NA non-coding upstream 34397 3609493 ~ 3615467 (+)
G263968 NA non-coding upstream 42915 3606620 ~ 3606949 (+)
G263967 NA non-coding upstream 44159 3605300 ~ 3605705 (+)
G263965 NA non-coding upstream 47573 3601993 ~ 3602291 (+)
G263964 NA non-coding upstream 48309 3601261 ~ 3601555 (+)
G263936 NA non-coding downstream 110529 3772468 ~ 3774488 (+)
G263941 NA non-coding downstream 143560 3805499 ~ 3807799 (+)
G263947 NA non-coding downstream 194795 3856734 ~ 3857069 (+)
G264142 NA non-coding downstream 683495 4345434 ~ 4345721 (+)
G264162 NA non-coding downstream 732929 4394868 ~ 4400467 (+)
G262436 NA other upstream 935347 2713615 ~ 2714517 (+)
G262423 NA other upstream 1406899 2241408 ~ 2242965 (+)
G262194 NA other upstream 2504857 1139352 ~ 1145007 (+)
G262060 NA other upstream 2939310 710110 ~ 710554 (+)
G261984 NA other upstream 2982482 665800 ~ 667382 (+)
G265391 NA other downstream 2251844 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 2673339 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004696 NA non-coding NC_007123.7 CM002896.2 22258962 ~ 22304841 (+)
bowfin (Amia calva) AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 misc CM030122.1 CM030122.1 29234504 ~ 29256824 (+)