CI01000063_03667811_03688065 (NSFB, NSF.L, NSFA, NSF)


Basic Information

Item Value
gene id CI01000063_03667811_03688065
gene name NSFB, NSF.L, NSFA, NSF
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3667541 ~ 3688065 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_03667811_03688065.mRNA
TGAGTATCTACAACTTTGACCCATCAAGACAGTATGTGGGAACCATGACGCTAGAGATTGACTTCCTCCAGAAGAAGAGCGTTGACAGCAATCCTTACGACTCAGATAAAATGGCCATTGAATTTATCCAGTTTTTCAACTCACAGGCCTTTACCATTGGCCAGCAGTTTGCCTTCAGCTTTTGTGACAGGCTCTTTGGACTGGTCATAAAAGATATCGAGGCCATGGATCCCAGCATCCTCAGAGGCGAGCAAACCAATAGCAAAAAACAGAAGATTGAGATTGGTCTGTTGCACGGCAACAGTCAGGTGATTTTTGACAAAGCCGAGAGCTCATCTCTCAATTTGATTGGAAAATCAAAGGCCAGAGGGTCTCGGCAGTCCATCATCAACCCCGACTGGAACTTTGAGCGCATGGGGATTGGAGGCCTGGACAAGGAGTTCTCGGACATCTTCCGTCGGGCCTTCGCCTCACGAGTCTTTCCTCCAGACATAGTGGAGCAGATGGGCTGCAAACACGTGAAGGGGATCTTATTGTTTGGACCGCCCGGCTGTGGTAAAACCCTGATGGCACGTCAGATTGGTAAGATGCTGAATGCTAGAGAGCCAAAAGTGGTCAACGGGCCAGAGATTCTGAACAAATATGTGGGCGAGTCGGAGGCCAACATCAGAAAGCTGTTTGCTGATGCCGAGGAGGAACAGAAGAGATTGGGGGCCAACAGCGGCCTTCACATCATCATATTTGATGAAATTGATGCCATCTGTAAACAACGTGGCAGCATGGCGGGCAGCACTGGGGTCCATGACACCGTAGTCAACCAGCTACTGTCCAAGATCGATGGTGTAGAGCAGCTCAACAACCTCTTGGTTATTGGAATGACCAACAGGCCTGACCTGATTGATGAAGCCCTCTTGAGGCCAGGAAGACTGGAGGTCAAAATGGAGATTGGCCTGCCTGACGAGACGGGTCGTGTTCAAATCCTGCATATCCACACAGCAAAGATGAGGCAGTCAAACATGCTGGCCAAAGATGTTGACATAAAAGAGCTGGCTTTCGAGACCAAAAACTACAGCGGAGCAGAGCTGGAAGGGCTTGTTCGGGCTGCCCAGTCGACTGCCATGAACCGTCACATCAAGGCCACTACTCAGGTAGAGGTGGACACAGAAAAGGCTCTTACTCTGCAGGTCAGCAGGAGTGACTTCTGGGCCTCTCTGAATAATGACATCAAGCCTGCATTTGGAACTAATCAGGAGGATTACGCCAGTTACGTCATGAACGGTATTGTGAAATGGAGCAATGCTGTGTCTGACATATTGGGAGATGGAGAGCTTCTGGTGCAACAGACCAAGAACAGGCCTCCTCACAGTGGTAAGACTGCACTGGCGGCCAAGATCGCAGAGGACTCCCAGTTCCCCTTCATCAAGATCTGCTCTCCAGACAAAATGATCGGCTATTCAGAGATCGCCAAATGTCAGGCCATCAAGAAGATATTTGAGGACGCCTACAAGTCCCAGCTGAGCTGTGTGGTGGTGGACGATATAGAACGACTGCTGGATTTTGTTCCCATCGGGCCACGGTTCTCTAACCTGGTGCTGCAGGCTCTGCTGGTATTATTGAAGAAACCGCCTCCTCGGGGTCGGAAGTTGCTGATTCTTGGCACAACTAGCAGGAAGGATGTTCTGCAGGAGATGGGCATGTTGGACACTTTCAGCACAACAATCCACATCCCTAATATAACTAGAGGAGAACAGCTCATTGAGGCCCTGGAGCTTCTTGGGGGCTTCCAGGAAGAAGAGCGAGCAACTATTGCAAAACAGGTGAAAGGACAAACGATGTGGCTGGGCATTAAGAAGCTGCAGATGCTTATTGAGATGTCACTGCAGATGCCTTTGGAATACAGAGTTAACAAGTTTTTGGCACTACTGAGAGAAGAAGGAGCGTTTGGCTCTGCTAAACACGGGGCCATATAGTCTCGGGTGCAGAAGACAAACCAAGGCTATTTTGGTAGGACTGACACACCAAGCCTTACTTTTGTCTGCCAATATTTCAGTGCACAATTTAGAGATGATCAAATACTGAAAAACTTAAAGAAATGATCAAAAACCACAATTGTAATGCATTTGACTTCTGTAATATGACATTTTAAGTGAAACAGAATATTCAGCATTCAGCGAAACTTGATTTTTTTTTTTTTTTCTCGGAGTTTGGTTTGTCAAAATTGACCCACTGGTTAAATTAAA

Function

symbol description
nsfb Predicted to enable ATP hydrolysis activity. Acts upstream of or within pigment granule maturation and retinal pigment epithelium development. Predicted to be located in cytoplasm. Predicted to be active in Golgi stack. Is expressed in several structures, including nervous system; otic vesicle; pectoral fin; pectoral fin bud; and swim bladder. Used to study oculocutaneous albinism. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human NSF (N-ethylmaleimide sensitive factor, vesicle fusing ATPase).
nsfa Predicted to enable ATP hydrolysis activity. Acts upstream of or within animal organ development; neurogenesis; and pigment granule localization. Predicted to be located in cytoplasm. Predicted to be active in Golgi stack. Is expressed in several structures, including nervous system; neural rod; neural tube; swim bladder; and trigeminal placode. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human NSF (N-ethylmaleimide sensitive factor, vesicle fusing ATPase).
nsf Enables PDZ domain binding activity and ionotropic glutamate receptor binding activity. Involved in intracellular protein transport; positive regulation of protein catabolic process; and positive regulation of receptor recycling. Located in Golgi apparatus; cytosol; and plasma membrane. Implicated in developmental and epileptic encephalopathy.

GO:

id name namespace
GO:0005795 Golgi stack cellular_component

KEGG:

id description
K06027 NSF, SEC18; vesicle-fusing ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_03667811_03688065.mRNA True 2240 mRNA 0.48 17 3667541 3688065

Neighbor

gene id symbol gene type direction distance location
CI01000063_03628232_03633396 NA coding downstream 34095 3628077 ~ 3633446 (-)
CI01000063_03615200_03619061 ORMDL2, ORMDL3 coding downstream 47105 3615136 ~ 3620436 (-)
CI01000063_03426029_03462400 NA coding downstream 203643 3425606 ~ 3463898 (-)
CI01000063_03373714_03386774 TR-ALPHA, THRAA, THRAB, THRA coding downstream 280767 3373043 ~ 3386774 (-)
CI01000063_03296061_03306819 EME1 coding downstream 360722 3295934 ~ 3306819 (-)
CI01000063_03695944_03716188 NA coding upstream 7879 3695944 ~ 3716188 (-)
CI01000063_03742908_03771506 NEURL4 coding upstream 54551 3742616 ~ 3771506 (-)
CI01000063_03772788_03776821 SHBG coding upstream 84551 3772616 ~ 3776821 (-)
CI01000063_03784602_03791834 ZBTB4 coding upstream 95529 3783594 ~ 3791834 (-)
CI01000063_03879695_03885921 ZCCHC4 coding upstream 191226 3879291 ~ 3886018 (-)
G264404 NA non-coding downstream 3640 3661599 ~ 3663901 (-)
G264582 NA non-coding downstream 17809 3649494 ~ 3649732 (-)
G264581 NA non-coding downstream 20965 3646365 ~ 3646576 (-)
G264580 NA non-coding downstream 22141 3645165 ~ 3645400 (-)
G264579 NA non-coding downstream 23104 3644140 ~ 3644437 (-)
G264406 NA non-coding upstream 109158 3797223 ~ 3800537 (-)
G264593 NA non-coding upstream 113986 3802051 ~ 3802307 (-)
G264383 NA non-coding upstream 117372 3805437 ~ 3807805 (-)
G264595 NA non-coding upstream 135436 3823501 ~ 3832858 (-)
G264602 NA non-coding upstream 273462 3961527 ~ 3964475 (-)
CI01000063_02725759_02726399 NA other downstream 941006 2725759 ~ 2726535 (-)
CI01000063_02326799_02327290 CBY1 other downstream 1339822 2326741 ~ 2327309 (-)
CI01000063_02177769_02178239 NA other downstream 1489205 2177747 ~ 2178395 (-)
CI01000063_01669384_01670016 HBAE1 other downstream 1997465 1669317 ~ 1672019 (-)
G265567 NA other upstream 1474429 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 1500338 5188403 ~ 5189645 (-)
CI01000063_05616519_05617045 NA other upstream 1858636 5615806 ~ 5617112 (-)
G265976 NA other upstream 2600093 6283058 ~ 6290946 (-)
G266797 NA other upstream 3601430 7289495 ~ 7290224 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016743 nsf,LOC107601245,LOC108260232,LOC107688085 coding CM030122.1 CM030122.1 29265759 ~ 29288483 (-)