CI01000063_03894170_03896007 (ZCCHC4)


Basic Information

Item Value
gene id CI01000063_03894170_03896007
gene name ZCCHC4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3894170 ~ 3896196 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_03894170_03896007.mRNA
TCGTGCTACGAAGTTTAACAGAATAAACTCACATTGTTCAATCATCAGTTTTTAAGCTCTCAGTTAAGAAGCGTTTATTTGACGATACGCGACGTCATATGTGTGCGACAGATTTGGTTGTCTAATGGCAGCCTTCTGTTACACATGTGAGTGTTGTTTTGGTTCTCATAAGTAAGATTTCTTGCAAGCATGGGTAAAATTCTGGATGATGTTGTGGATAGCGGCGGAATAGAAGTGATTATTCAAAACGAAAGCGACAAAACAATACCACGGTGTCCACATGGACCAGCTCTGTTGTTCGAGAAAACTGGCAATGGAGAGGAGAAAGGAAGGAGATTTTACGCGTGTTCTGCTTGTCGAGATAGAAAAGACTGCAACTTCTTTCAGTGGGCAGACGAGAAGATATCAGAGGCAAGGATGCTTGCCAGAGAGGAGCAGAACCGCTCCAAGATGCCTCTTTTCACTCATCAGGAATACTGCTCTAGATTTAGGGAATTTGTGTCTCTGCCACTAGAGCAGAGAAGGTTCTGTGTGGACTGTCAGATGTTGATCTTACCTGGGGAATGGGCGAATCACGCGAAACACAGGGCACTTTCTGAGGACATCACAGTGCAGCGGTTGAAAAGGCCCAGTCTACTTCTGTGTCCTCTGGACAACAAGAAGAGTAATGCACAATATCTGTTTGCAGACCGGAGCTGTCATTTCCTCCTGGATATGCTCCTGGTGTTAGGCTTCAAGAAAATTCTCTGCGTAGGGACACCACG

Function

symbol description
zcchc4 Predicted to enable rRNA (adenine-N6-)-methyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to act upstream of or within methylation. Predicted to be located in nucleus. Predicted to be active in cytoplasm and nucleolus. Orthologous to human ZCCHC4 (zinc finger CCHC-type containing 4).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_03894170_03896007.mRNA True 764 mRNA 0.45 4 3894170 3896196

Neighbor

gene id symbol gene type direction distance location
CI01000063_03879695_03885921 ZCCHC4 coding downstream 8152 3879291 ~ 3886018 (-)
CI01000063_03784602_03791834 ZBTB4 coding downstream 102336 3783594 ~ 3791834 (-)
CI01000063_03772788_03776821 SHBG coding downstream 117349 3772616 ~ 3776821 (-)
CI01000063_03742908_03771506 NEURL4 coding downstream 122664 3742616 ~ 3771506 (-)
CI01000063_03695944_03716188 NA coding downstream 177982 3695944 ~ 3716188 (-)
CI01000063_04056574_04087071 MKXA, MKX coding upstream 160000 4056196 ~ 4088615 (-)
CI01000063_04101695_04159421 ARMC4 coding upstream 205206 4101402 ~ 4159421 (-)
CI01000063_04183070_04264881 MPP7A, MPP7 coding upstream 286384 4182580 ~ 4264881 (-)
CI01000063_04471188_04479927 MAP3K8 coding upstream 573704 4469900 ~ 4479927 (-)
CI01000063_04667829_04669237 CHAC2 coding upstream 770970 4667166 ~ 4669237 (-)
G264595 NA non-coding downstream 61312 3823501 ~ 3832858 (-)
G264383 NA non-coding downstream 86365 3805437 ~ 3807805 (-)
G264593 NA non-coding downstream 91863 3802051 ~ 3802307 (-)
G264406 NA non-coding downstream 93633 3797223 ~ 3800537 (-)
G264404 NA non-coding downstream 230269 3661599 ~ 3663901 (-)
G264602 NA non-coding upstream 65331 3961527 ~ 3964475 (-)
G264646 NA non-coding upstream 68865 3965061 ~ 3965707 (-)
G264647 NA non-coding upstream 69831 3966027 ~ 3966241 (-)
G264600 NA non-coding upstream 88957 3985153 ~ 3985847 (-)
G264673 NA non-coding upstream 140238 4036434 ~ 4036726 (-)
CI01000063_02725759_02726399 NA other downstream 1167635 2725759 ~ 2726535 (-)
CI01000063_02326799_02327290 CBY1 other downstream 1566451 2326741 ~ 2327309 (-)
CI01000063_02177769_02178239 NA other downstream 1715834 2177747 ~ 2178395 (-)
CI01000063_01669384_01670016 HBAE1 other downstream 2224094 1669317 ~ 1672019 (-)
G265567 NA other upstream 1266298 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 1292207 5188403 ~ 5189645 (-)
CI01000063_05616519_05617045 NA other upstream 1650505 5615806 ~ 5617112 (-)
G265976 NA other upstream 2391962 6283058 ~ 6290946 (-)
G266797 NA other upstream 3393299 7289495 ~ 7290224 (-)

Expression


Co-expression Network