CI01000063_03991410_04022994 (AFAP1)


Basic Information

Item Value
gene id CI01000063_03991410_04022994
gene name AFAP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3991301 ~ 4023699 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_03991410_04022994.mRNA
CTTTAAATACAAGAACATTTCAAATATTTAATGGACAAAAATCACTCCATCTGCAATTTTGATTTGTGCATACTTGAAGGAGGGATTTTAGGGTAATACCTGCATTTAAATGAACTATAGCCAACCTGAAAAAGACTGGCTCATATCCAGATCGATGGAGGAGTTGTTGGCAGAGTTGCGGGTCTTTTTGGAGTTGTTAGACAGAGAGTATTTAACTGCTGGAGTGAGAGAGAAGAAACAGCAAATATTAAACATCCTGCACAGAGTTCTAGCCACTAGAGATGCCCCTTCCAGAGATTCCTCACCCCTGGATGCCTTCTATGGCCCTTACGAGTGGTCAAAGCCACAGCGGGGAAGAAACGGAGGGATTGAAGAAAAGGGACTGATACAGGGCATGTGGGTGCCTCCAGACAATGGGCCTCCTCCCTTGCCGAGCTCCTCTCTTCCTGAAGGTTATTATGAAGAAGCTGTTCCGCTAGGCCCTGGGAAAGCACCAGAGTACATCACCTCTAATTATGACTCAGATGCTATGAGCAGTTCATATGAGTCATATGATGAGGAAGAGGAGGATGGGAAAGGGCAGAAGATGCGTCACCAGTGGCCATCTGAGGAGGCCTCCATGGACCTGGTGAAAGATGCGCGAATCTGTGCCTTCCTGTTGCGAAAGAAACGTTTTGGACAGTGGACCAAACTGCTCTGTGTCATAAAGGACAACAAACTGTTGTGCTATAAGTCGTCTAAAGACCAGACTCCACAGATGGAGCTCCTCCTTTCTGGCTGCAGTATCACACACATTCCCAAAGACGGCAAGAAAAAGAAGCATGAACTGAAGATCGTCCATCAGGGAGCTGATGCTCTGGTGCTTGCTGTACAGAGCAAAGAACAGGCCGAAGAGTGGCTAAAGATCATCGAAACCAGCTGCAGTCAGCGGACGATTGATGGAAATAGCATTTCCCTCATCGCTGTCCATCACTCTTCTGGTGGCTCTGTTTATAAAGACATCACTTGTTGCAACCGTCTCATTTATAAAGACACAAAAAAGAGATTTTCTGAATCCATCACCATGTTTCCATGTGGTAACGAGCTTCTGTTTATTGATTTGTGGGCAGGAAGGCACATGCAGCCTGGGGAAATTCCACCTTCTGTCTTTCTTCTTCCCTTCGTTCTTCTTTCTTCTCTCTTTTTGTCATCTGACTCTCCACTGCCTTGGGCTAGAATGGTGATGAAGGAAGTCTGCTCCAATGGAAATGGAGTGGTGGACTGTGACGGTGCTGGCTCTGGTTCCCCTATTCACAAAGCAGAGCTGGAAAAGTGGCTCTGCTGCCAGGGCAAGGAGGGCTATAAAAACTGCATATGCGTACCAAATTTCATCTTGCCACGGATGTGTGCTGCTGGCAAGAAGCTGTCCTGCGATCGACCCAGTTCAGATGGAGAGCCCTGCCATGAAAATGGCATCTCAGATGGCAAAGATCCAGCCAAAGGCAAGAAGAACTCTAAATCAGAGCAGAAAGGCACTGTGGGACGTGTGACTGGAAAGAAGATCACTAAAATCATAAGCCTGGGCAAGAAGAAACCATCTACAGATGAACAGACCTCATCAGCGGAGGAGGATGTCCCAACATGTGGCTATCTGAACGTGCTGTCCAATAACCGCTGGAGAGAGCGCTGGTGCCAGCTAAAAGACAACCAGCTGTTGCTGCACAAAGACCGGGCAGATCTGAAGACACACATGGCCTCTCTGCCGCTGCGGGGGTGTGAGGTCATTCCAGGGCTGGACTCCAAACATCCCTTCGCCTTCCGTCTGCTGCGCAATGGACAGGAGGTGGCTGTTCTGGAGGCCTCATCCTCTGAGAGTATGGGAAGGTGGTTGGGGGTCTTGCTGGCCGAAACGGGCTCCACGACAGATCCTGCTGCATTGCACTACGATTACATTGACGTAGAGACCACTGCTAATGTAATTCAACTGGCCAAGCAGTCATTTTGCTTCACCAGTAAGCGTGCAGTTTCTCCAAACCCATACCTGGATAACCCAGTCAATGGTTATGCCTGCCCCACAGGGGTCGCTCTGCATTATGATGATGTGCCCTGCATCAATGGATCGGTATGCAACTTCACAAACTTTAAATCCATTAAATTCTCGGCTTTATTTCTGATCCTGCCTAACTCCTCTCCGTTTCTGATCCTCCCTAATTTCTCACTTCTAATCACTTTTCTCTTGCTTGCACGCTTGCGATACGGGAAGGTACCAGATGCGCACTACTCCACCCCAGCTTCAGGGGACTGTCGTTGGAAAGAAGAGTCTCATTATGAGAATACAGATCTTTATGAAAACATGCCCTCCCCCAAACTAGCAGCACGCTACTCTCCCAAATCCATCCGCCCCTCATCTTCCACAGGGCATTACAACACACCGCTCTCCACCAAATCTCTGTCCTCTTCCTCCTCTCCCTCAGCTGCTAATACTAACACTAACCAGCTGAAAGGAAAGAAAGGCCTGACCACCAATGGGTTCGCTGCAAAGCAGAAGTTGGACAAGAACCAGCCCAAAAAGGCCAATGGAATTAGCAGCACTCTATCAGTGAAACGCAACAACTCTAGTGTGGATCAGTATAAGTACGGGAAAAACAGAGTAGAGGCAGATGCCAAGAAACTGCAAGCGAAAGAGGAGGAGCTGATGAAGAGGAAGCAGGAAATTCGAAACCGCCTGACCCAGCTGAAAAAAGACAGGAAGGACCTCCGCACTGCTATAGAGAACACCACAGGCAAGCGTTCTCAGGCAACTTTGACAGAGAGACTTAAGAAAGTGGAGGATGAATGCAAACTGAAAGAGGAGGAACGAGTCAATCTGGAGCTGGAACTGACAGAGGTGAAGGAGAGTCTGAAGAAAGCCCTGAATGGAGGCGTCACCCTGGGCCTGACCATTGAACCCAAAACTGGCAGCTCCAGCCCACAGTCTCCAGTGTTAATGAGGCGAACGGTGGACAACTCACCCATCTCCAGCTGTGACACCAGTGACACTGAGACCTGCTCTCTGCCAGTCAACAGTGCGTCTCTGCTGCGCCGCCAGACACAACAGAAAGCCTCACCTGTGCGAGGACACGTCCTCAGGAAAGCCAAGAAAAAGTGTAATCTGTATGAAAGTATTTTACCAGCGTCGTCTCCTCCTCGGTGTCTGGCCCATTATTTTCAATCCAGTGGTCTGGCCAAACTTTTGGCTATGTTAACAGCAGCCCATGGGGAACAGGGCAGCTCAGGCCAGGGTGTGGTCCTCTGTTGGCTGACTGCTCTGGAAACTGGGTCTGAAAGTACAGCTCTTCCCCATCCACTGCACTGAAACTGCAATGCGTCATACACTGACAGTTATACATGCACTGTATGCTAACACAAAGAAGCGTGCATATGTGAAGTTTCATTATAGTTTGCAGTTGTTATCTGTTTGCTTTCAAAAACCAACTGTTTGGTTGAACAAAAGTATGTTTTTTGCAGAAGATTTCAGGCTGTAGCATCCTGCTTTGTTTTGACCACTCTAAGTGCAGCCACCTGACATACTGAAAATGGTGCTTTTAAGCAATGCTTAAACCGTTAACTCCTCCTAATTCAGCCAGATCATGGAGTCTTGGTGCTTAATTTAGATATTAATGAGATATTAATGTTCAAGGCACATTTATAACTCTTTGTTTATTGTGCAGTAAAGTTCAGCATTTGATTTGAGGCTACACATTTTCTACAACAACACTACACGCAGGGTCCTGTGTAAATATAATTCTACTTTTTTTCTACTTGGGCCCATAGATCTTTAGAGCTTTTCTTTGTCCAGTCATTTTGTAAAAGTCAGCACTGGATGAAACCTTGGTATCACTATATTCATAAAGGAGAAATCTCTTGGAAGTTATCGTTATCTCCAGCTCACCAAAGTAGATGAGATGCTTCAGTCTTTCTGCACAACTGCTTATTCTTTGGTCAGAGTGATTTACTGATTTGACACAGTAAAACTGTAAACCCTTTAGGTTAAGTCAGCTTTCAGCCTCACTTTGCAGAA

Function

symbol description
afap1 Predicted to act upstream of or within regulation of cytoskeleton organization and regulation of signal transduction. Is expressed in brain. Human ortholog(s) of this gene implicated in open-angle glaucoma. Orthologous to human AFAP1 (actin filament associated protein 1).

GO:

id name namespace
GO:0009966 regulation of signal transduction biological_process

KEGG:

id description
K18616 AFAP1; actin filament associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_03991410_04022994.mRNA True 4039 mRNA 0.47 21 3991301 4023699

Neighbor

gene id symbol gene type direction distance location
CI01000063_03920353_03956590 ABLIM2 coding upstream 34711 3920353 ~ 3956590 (+)
CI01000063_03896845_03900770 CDCA9 coding upstream 90176 3896750 ~ 3901125 (+)
CI01000063_03886948_03891089 NA coding upstream 99482 3886687 ~ 3891819 (+)
CI01000063_03868669_03878824 MFSD8 coding upstream 111458 3867597 ~ 3879843 (+)
CI01000063_03848184_03856699 NA coding upstream 134596 3847172 ~ 3856705 (+)
CI01000063_04026940_04034428 RAB18B, RAB18, RAB18.S, RAB18A coding downstream 3241 4026940 ~ 4034703 (+)
CI01000063_04168036_04180451 NA coding downstream 142845 4166544 ~ 4180516 (+)
CI01000063_04310020_04338879 WACA, WAC coding downstream 286321 4310020 ~ 4339018 (+)
CI01000063_04345980_04349791 BAMBI, BAMBIA coding downstream 322281 4345980 ~ 4350236 (+)
CI01000063_04479946_04487899 MTPAP coding downstream 456125 4479824 ~ 4487907 (+)
G263947 NA non-coding upstream 134232 3856734 ~ 3857069 (+)
G263941 NA non-coding upstream 183502 3805499 ~ 3807799 (+)
G263936 NA non-coding upstream 216813 3772468 ~ 3774488 (+)
G263945 NA non-coding upstream 375834 3609493 ~ 3615467 (+)
G263968 NA non-coding upstream 384352 3606620 ~ 3606949 (+)
G264142 NA non-coding downstream 321735 4345434 ~ 4345721 (+)
G264162 NA non-coding downstream 371169 4394868 ~ 4400467 (+)
G264171 NA non-coding downstream 380173 4403872 ~ 4404343 (+)
G264172 NA non-coding downstream 382333 4406032 ~ 4406271 (+)
G264174 NA non-coding downstream 385989 4409688 ~ 4410067 (+)
G262436 NA other upstream 1276784 2713615 ~ 2714517 (+)
G262423 NA other upstream 1748336 2241408 ~ 2242965 (+)
G262194 NA other upstream 2846294 1139352 ~ 1145007 (+)
G262060 NA other upstream 3280747 710110 ~ 710554 (+)
G261984 NA other upstream 3323919 665800 ~ 667382 (+)
G265391 NA other downstream 1890084 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 2311579 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017617 LOC107738968,LOC107733469,LOC107584377,LOC107657296,LOC107665873 coding CM030131.1 CM030131.1 13831346 ~ 13867377 (-)