CI01000063_04026940_04034428 (RAB18B, RAB18, RAB18.S, RAB18A)


Basic Information

Item Value
gene id CI01000063_04026940_04034428
gene name RAB18B, RAB18, RAB18.S, RAB18A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4026940 ~ 4034703 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_04026940_04034428.mRNA
ATGAACGAGGATATTTTGACCACTCTGAAAATACTGATCATTGGAGAAAGCGGAGTGGGCAAATCCAGTCTTCTTTTGAGATTTACAGATGATACATTTGATCCAGAAATTGGTGCAACAATTGGTGTGGATTTCAAGGTGAAAACCCTGGCTGTGGATGGAAACCGAGCAAAGCTAGCAATCTGGGATACAGCAGGTCAGGAACGTTTTCGAACTTTAACACCCAGTTACTACAGAGGAGCTCAGGGTGTCATTCTGGTGTATGATGTCACTAGGCGAGAGACTTTTGCTAAGCTGGATAATTGGTTGAATGAGCTGGACACATACTGTACGAGAAATGACCTTGTCAAGATGCTTGTGGGAAACAAAATTGATAAGGAAGACCGTGAGCTAGAGCGAGACGAGGGTCTGAAGTTCGCTAGAAAACATTCCATGCTTTTCATAGTTCTATCAGTTCGGTCTCTGTTTCTCCACATCCCTCAGTCTTTACAGAATAATAGAGCTACCATGGTTTTGGATCTGTGTTTTACTACTTTTATTGACTTGGACCGCCCACTTAAAAACATGTTTTTGAAGGGTTTATAAATCAAACAGATTGGCACAATGAATCTATATTTTACATTTAAAAAGAGGGTGAAAAAATAACTAGAATAGAGATGAATCGATGGAAAAGTATAATTTCTTTCTGTTCGCCTGCATGGGCTCATGGACAGCGTAACACTTACTGTCCTGACATGTCTGTCCATCTTAGAGAAAGGAAAAAATGTTTAAAAATCCTTCGAGTGAGTCATTAGGGTGTGACTATAGATGGTGGGTTTTTACACACACAGAAATGGAACAAAAGAACAAATTTAGAAATA

Function

symbol description
rab18a Predicted to enable GTPase activity. Acts upstream of or within chordate embryonic development and eye development. Predicted to be located in apical plasma membrane and lipid droplet. Predicted to be active in Golgi apparatus. Is expressed in brain; heart tube; optic cup; retina; and retinal inner nuclear layer. Human ortholog(s) of this gene implicated in Warburg micro syndrome 3. Orthologous to human RAB18 (RAB18, member RAS oncogene family).
rab18b Predicted to enable GTPase activity. Involved in brain development. Acts upstream of or within chordate embryonic development and eye development. Predicted to be located in lipid droplet. Predicted to be active in Golgi apparatus. Is expressed in brain; heart tube; optic cup; retina; and retinal inner nuclear layer. Human ortholog(s) of this gene implicated in Warburg micro syndrome 3. Orthologous to human RAB18 (RAB18, member RAS oncogene family).
rab18 Enables GDP binding activity. Involved in endoplasmic reticulum tubular network organization. Acts upstream of or within lipid droplet organization. Located in endoplasmic reticulum tubular network and lipid droplet. Implicated in Warburg micro syndrome 3.

GO:

id name namespace
GO:0019003 GDP binding molecular_function

KEGG:

id description
K07910 RAB18; Ras-related protein Rab-18

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_04026940_04034428.mRNA True 860 mRNA 0.40 7 4026940 4034703

Neighbor

gene id symbol gene type direction distance location
CI01000063_03991410_04022994 AFAP1 coding upstream 3241 3991301 ~ 4023699 (+)
CI01000063_03920353_03956590 ABLIM2 coding upstream 70350 3920353 ~ 3956590 (+)
CI01000063_03896845_03900770 CDCA9 coding upstream 125815 3896750 ~ 3901125 (+)
CI01000063_03886948_03891089 NA coding upstream 135121 3886687 ~ 3891819 (+)
CI01000063_03868669_03878824 MFSD8 coding upstream 147097 3867597 ~ 3879843 (+)
CI01000063_04168036_04180451 NA coding downstream 131841 4166544 ~ 4180516 (+)
CI01000063_04310020_04338879 WACA, WAC coding downstream 275317 4310020 ~ 4339018 (+)
CI01000063_04345980_04349791 BAMBI, BAMBIA coding downstream 311277 4345980 ~ 4350236 (+)
CI01000063_04479946_04487899 MTPAP coding downstream 445121 4479824 ~ 4487907 (+)
CI01000063_04524187_04533040 NA coding downstream 488751 4523454 ~ 4533366 (+)
G263947 NA non-coding upstream 169871 3856734 ~ 3857069 (+)
G263941 NA non-coding upstream 219141 3805499 ~ 3807799 (+)
G263936 NA non-coding upstream 252452 3772468 ~ 3774488 (+)
G263945 NA non-coding upstream 411473 3609493 ~ 3615467 (+)
G263968 NA non-coding upstream 419991 3606620 ~ 3606949 (+)
G264142 NA non-coding downstream 310731 4345434 ~ 4345721 (+)
G264162 NA non-coding downstream 360165 4394868 ~ 4400467 (+)
G264171 NA non-coding downstream 369169 4403872 ~ 4404343 (+)
G264172 NA non-coding downstream 371329 4406032 ~ 4406271 (+)
G264174 NA non-coding downstream 374985 4409688 ~ 4410067 (+)
G262436 NA other upstream 1312423 2713615 ~ 2714517 (+)
G262423 NA other upstream 1783975 2241408 ~ 2242965 (+)
G262194 NA other upstream 2881933 1139352 ~ 1145007 (+)
G262060 NA other upstream 3316386 710110 ~ 710554 (+)
G261984 NA other upstream 3359558 665800 ~ 667382 (+)
G265391 NA other downstream 1879080 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 2300575 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004706 rab18a coding NC_007123.7 CM002896.2 22921477 ~ 22933524 (+)