CI01000063_04168036_04180451


Basic Information

Item Value
gene id CI01000063_04168036_04180451
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4166544 ~ 4180516 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_04168036_04180451.mRNA
CTATAAAATGGAGGCAATAAAGTCAATTATTTCTGCACTAAACTCTCTCTCTCTCTGCTGAGAAAACAACATCAGATACGACAAAATGTTTTCTCTGTAACAATGAATATCAGTGCTCAGGCCTGGCCTGCTTCTAAACCTACAATTGTGGCTTTCATGTGATGTGTGCATATGTCAAGCCGCTGTGTGCCTGTGCTTTCTTTGGAGCAGGAGCCTGACTTTCAAATATAGATGTTAAAAGGAGATTTATGAATATATGGATTTATGGTAAAAACTAATAATGGTTCTTTGTGGTAGTAGTACATATTGGAGAAGGTTTTTTAGGCATTGTTTGTTTATTCAATGTTTTTCATCGTTGTTCATCAAAACCCCAATTCCTCAGACTAAATCAACGAGAACTTTAACCACAACTTTACAGATATGGAATAAGCTGATCGAGCAACCTCAAATCATGTCCTTGAGAAAACGATATCATAATAAAACTGAATATTTACATCCAATTGGAAAGACTGAACATTTTGATTCCACTTTGCACGGAAAAGCAAGCACTGGATAACTTGATATTTTTCCAAAATATTTGCTAAATATGTCAACATAAAGATTCAAATGGGTTCCAATGATGTAGCATATATTCAAAATACCATATATGATCTCACACCTAAACTCTAGCCAAGTCATACTTTCCAAAGTGTATTTTACAAGAAAATACCATTTCAGTTTTTCTACTTCAAATTTTCACATTTAATTCAATTACTTGCCATTTCATTCTAATTGTTTGAGAAATTTATAAGCAATTTCGGAGTAAAAATTGTTATATATATATTTTTTGTCCAGCATATCTAACTGCTTTCAAATGAACGATCTTGGAAAGCACTCTCTGACTGTTTATTGGACCTATTTTCTTTCTTCTGACTTCTAGACCTGCCCATGCCCCCAAATCATCGGTCTTGATCCACACTACATATGCCTCGGTTTCCCCGCTCTCTATCCAAAGACGGCTCCCCAGCGTCCGGTTGTACACCCACACCTCCCTTCTCCTGCTGATAACTGGTGCTTCTACGATTTCAAAGGCATGTTTGAGCCGAAGTGCAGATCCTAATGTTCTTTCCTCTCTCTCGCAGTGTAATTATTATTTTGAAAGTGCGGTCTGGGGAGGCTGTCAGGGTTTGGCACAGTCTATGGCAGTAATGTGCTGGGTGTTTTAATACAGCTTGACTTCTGTTTTATAAACTCTGCGGGCAAACATCACAGGCTCTACGGTTCTTTCTCTCCCTTTCTCCCCTGCCCTCCTGTCTCGATGAACGCACACAGATGTGCCACTTGGTATTTCTCTCTACCATGTGGTGGGTGGCGTGCATGTGTGCGTTGTGGTGTGTCAGGCTGTTTGTCTAACACGGTCATTGGTTAAGAGTTTAGGTCCTAACAGGCTCAACACTGGCAGCGTTCTTGTAATTTAGTGGGGGGAAAGATAGAGATGAAAACAGAAAACAGAATGAGACCTGGAAGGAATGAGGAACCCATGACATGTATGGAGAAAAAACAGAAGAACTCTGTAACAGTGATATCCTACTATGGCACCATGGAAAAGCACTTAAAGTCACACAAGACAGCGCTGATGTTTCCTCAGATCACAAACACTGCCATGCTCGCTAACAGCAGAGGCCTGATCAAAGACAAAGCTCTCGGTCTGCACCTCCTTTCTGTACCTCGGGCGTCTGCAGACGTCAGGTCAGATGAGAAAACCAGAGTGAAAGTCAAAGCAGACACACAGCATGAGGACAAAGTATTAACAAGCCAGACAGTAAAGTGTCACATCGCAAGGACTTATGTGTTCAAATTCAGCCAGGAAGGGGACAGAAAGAGGAGATATGTACAGTTATGTGTCAGCATTAATGGTTGTGTTCCTCTGTGGGGCTGGCTGATTATTAATGACAGTGTGGCAGAAACCTTAGCCGACTACACGCTTTCCTGTCCGCTCTGCTCTCAGCTGCGGGTGAACACCAAACAGGCTGATGCAACACTGAAAACCTCTGAGCGGCGGCGGCAGGACTGTGTGATGGAGGGGGAGCTGGAGGATTATGGGTCATTGTGTTGGCTGCTGGTTTGTTTTGGCATTTCATCAGACAGTGAAATCTCTGTAGTGAGCAAAGCCTGAGCGATGAGTCTGTCCCACTGGCCCTTTGTGTCTGAAGACCTGCGAATGCTGACATGAATCAATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_04168036_04180451.mRNA True 2220 mRNA 0.42 4 4166544 4180516

Neighbor

gene id symbol gene type direction distance location
CI01000063_04026940_04034428 RAB18B, RAB18, RAB18.S, RAB18A coding upstream 131841 4026940 ~ 4034703 (+)
CI01000063_03991410_04022994 AFAP1 coding upstream 142845 3991301 ~ 4023699 (+)
CI01000063_03920353_03956590 ABLIM2 coding upstream 209954 3920353 ~ 3956590 (+)
CI01000063_03896845_03900770 CDCA9 coding upstream 265419 3896750 ~ 3901125 (+)
CI01000063_03886948_03891089 NA coding upstream 274725 3886687 ~ 3891819 (+)
CI01000063_04310020_04338879 WACA, WAC coding downstream 129504 4310020 ~ 4339018 (+)
CI01000063_04345980_04349791 BAMBI, BAMBIA coding downstream 165464 4345980 ~ 4350236 (+)
CI01000063_04479946_04487899 MTPAP coding downstream 299308 4479824 ~ 4487907 (+)
CI01000063_04524187_04533040 NA coding downstream 342938 4523454 ~ 4533366 (+)
CI01000063_04544999_04552162 NA coding downstream 363526 4544042 ~ 4552265 (+)
G263947 NA non-coding upstream 309475 3856734 ~ 3857069 (+)
G263941 NA non-coding upstream 358745 3805499 ~ 3807799 (+)
G263936 NA non-coding upstream 392056 3772468 ~ 3774488 (+)
G263945 NA non-coding upstream 551077 3609493 ~ 3615467 (+)
G263968 NA non-coding upstream 559595 3606620 ~ 3606949 (+)
G264142 NA non-coding downstream 164918 4345434 ~ 4345721 (+)
G264162 NA non-coding downstream 214352 4394868 ~ 4400467 (+)
G264171 NA non-coding downstream 223356 4403872 ~ 4404343 (+)
G264172 NA non-coding downstream 225516 4406032 ~ 4406271 (+)
G264174 NA non-coding downstream 229172 4409688 ~ 4410067 (+)
G262436 NA other upstream 1452027 2713615 ~ 2714517 (+)
G262423 NA other upstream 1923579 2241408 ~ 2242965 (+)
G262194 NA other upstream 3021537 1139352 ~ 1145007 (+)
G262060 NA other upstream 3455990 710110 ~ 710554 (+)
G261984 NA other upstream 3499162 665800 ~ 667382 (+)
G265391 NA other downstream 1733267 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 2154762 6335618 ~ 6338283 (+)

Expression


Co-expression Network