CI01000063_04524187_04533040


Basic Information

Item Value
gene id CI01000063_04524187_04533040
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4523454 ~ 4533366 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_04524187_04533040.mRNA
TTATAAAAACAGGAAGGATTTTGTAATCAGCCACTGGCACGTGGCTGTTGTTCCCATTCCAGACTCCTTTCACCACTAGGATGATTGTGTTTACTTATTTTAATTTCCCTAAATGAACAGGCCTTTTTATGATTTTTCCTTGACTTAGATATTGACAAATATGTCAAAAAGTGCTCATCTTGACATCTGACAGGATGACGATAAGGAGGTGTATTAGTTTCAGAGAGTCTGTGATTATTTTGCACATATATACAAATAGCACATTTTCATGCATATGCCTTTGATGTTCAGTGCTTGTCTATCAAGGACAGCAGTTGGGTTTTCATATTCCACGGCGGAATGGCAGTTATGTAAGAACGTGCACCGGCACGGAATTTCATGGTGGCAGATGACGAATCCCCGAGGACTTCGATCACTCTCTTAGCTCTCAGTTCAATGTGTCTGTGCGCTTAACACGACATGACAAAGTGTGCTGAGGATCTAGGTCAGCTTTTTTAAGTTTTCTACCATTCTTCACTCTCTGTGTGCGTTAGACATACAATCCAATGTTTAATTAGGTGACATTCAGCTGGAAATTCAACTGCAATTGAGATTTTTTTTTTTCTTGAATTCCTTTTATAAATTCAAACTAAGCCTTCTCCACACCTCCCTGATGTGTTTCATTATAGAATGCTCTTGAACAGAAGTTCTCAGTATGAGATTGTGGGCTGGTGCTACATCAAAGTAGATCAGCATGAGCCCTAATATCAACAGCTGGCAGCTGTTCGCAAAGGCAGTCCAGAGCATTTTCTTCTGTTTGTTTTTGTTATTTTTCTCCTTCACCCATACATTAATAGACATTAATAAAAAGACTTGTGTGTCAACAGCAATCAATGTGGAGACAGTCAACCCGTTTCGGTCAAACAAGTTTGAGGAATGGATAACTCCACGACCTGATATGCTCAGCACAGAGCGGATTCAACACACTACATCAGGAACTAAACACGGTCCTCGAAAAGAGCACATCTCAGGGGTCGGGCGCAGTGCGCAAGATGTGTGCTACATTAGCGAGAGGAAGCGACCTGTGTCAGTTTGCGGGATGCAAACAGTGAGGTGCGAGGTCAACAACTCTGCGGCGGATGGTACAGTAACTCCAACTCAATTGGGAAGCTACTGAAGGGCTCCTTTTGGTGGTGCTTTTGACCTTGACTTGTGTAGATGCCAGCAGAGCAGAGGAGTCTGGTTTAGAATGAGCTCTTATCTATGTGATGAAATGAGCCCTCGTTTTGTGATCAGAGTGGAATTGGTACAATGTACAACAGGTCTTTTGATTGCCAAGGTCCTGTTTAGAGGCTGTTGGAAAGGACCTAATCAAGCATATCTCTCTTCGGTTTATAGATCTTTGTTTTCAAAAGCAAGAATGTAGGCTATTTGTTATATAAAGCTGTGCATGTTGGAAGCTGTTGTAAAAGGTGAAGAAATACAACAAATGGTCACTCCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_04524187_04533040.mRNA True 1482 mRNA 0.42 6 4523454 4533366

Neighbor

gene id symbol gene type direction distance location
CI01000063_04479946_04487899 MTPAP coding upstream 35547 4479824 ~ 4487907 (+)
CI01000063_04345980_04349791 BAMBI, BAMBIA coding upstream 173218 4345980 ~ 4350236 (+)
CI01000063_04310020_04338879 WACA, WAC coding upstream 184436 4310020 ~ 4339018 (+)
CI01000063_04168036_04180451 NA coding upstream 342938 4166544 ~ 4180516 (+)
CI01000063_04026940_04034428 RAB18B, RAB18, RAB18.S, RAB18A coding upstream 488751 4026940 ~ 4034703 (+)
CI01000063_04544999_04552162 NA coding downstream 10676 4544042 ~ 4552265 (+)
CI01000063_04568412_04568747 NA coding downstream 34918 4568284 ~ 4569210 (+)
CI01000063_04594405_04629754 SVIL coding downstream 61039 4594405 ~ 4630452 (+)
CI01000063_04633004_04663849 PSME4B, PSME4 coding downstream 98643 4632009 ~ 4664015 (+)
CI01000063_04670608_04680828 ASB3 coding downstream 137242 4670608 ~ 4680901 (+)
G264206 NA non-coding upstream 27527 4495716 ~ 4495927 (+)
G264205 NA non-coding upstream 28735 4494504 ~ 4494719 (+)
G264204 NA non-coding upstream 29358 4493790 ~ 4494096 (+)
G264158 NA non-coding upstream 50479 4469864 ~ 4472975 (+)
G264164 NA non-coding upstream 57508 4465389 ~ 4465946 (+)
G264960 NA non-coding downstream 222348 4755714 ~ 4756121 (+)
G264946 NA non-coding downstream 225038 4758404 ~ 4872562 (+)
G264997 NA non-coding downstream 480983 5014349 ~ 5014586 (+)
G265004 NA non-coding downstream 490756 5024122 ~ 5024402 (+)
G265005 NA non-coding downstream 493779 5027145 ~ 5027379 (+)
G262436 NA other upstream 1808937 2713615 ~ 2714517 (+)
G262423 NA other upstream 2280489 2241408 ~ 2242965 (+)
G262194 NA other upstream 3378447 1139352 ~ 1145007 (+)
G262060 NA other upstream 3812900 710110 ~ 710554 (+)
G261984 NA other upstream 3856072 665800 ~ 667382 (+)
G265391 NA other downstream 1380417 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 1801912 6335618 ~ 6338283 (+)

Expression


Co-expression Network