CI01000063_04594405_04629754 (SVIL)


Basic Information

Item Value
gene id CI01000063_04594405_04629754
gene name SVIL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4594405 ~ 4630452 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_04594405_04629754.mRNA
TCTCAGAATTAAGGAAGCGTTTTGAGAGTATAAGCACGAGTCAGAGTTGGGACATGAACAGGAAAGAGCGAATTGCACGGCGTCTGGAGGGAATCGATAGTGAAGTTCTCCAAAATATCCCAGGTTGTGGCGGTCTAGTAACCAATCGACTGCTAGAGGAGGACACCCCAAGATATACCCGTGCAGCAGACACCTGTGACCCCTGTACAGTTTCTCTTCAGCACTATGGCAAAAATGACCCAAACTTCCCCAATCCGCACAGTGCAGAGGTTCAGTCCAGAACCCACATGGTACAACCGGAGTCTGTCTACACCACTGGCTCCACTCATGTGGCAGAGCCGGACTCTAAAGCTGAAAGGATTGCTCGCTACAAGGCAGAACGGCGCCGTCAACTAGCAGAGCGCTATGGCATCTCTCTGGATCAGGAGACAGAAACCGACTATACCGCTCGCTACTCCAGAACCTCCAGAGAGCCCGAAGGCTCCGACCAACAACACAGGTCAAAGGTAGAAGGAGGAGACAGGGTGGAGCATAATGCTTACACCACCAGCCATCATGTAGATAGGGCTAGCTCTCACATTCACACCGATCCAGAGTACTGCCGAGAACGCACAGACTCCATCTCTGAGCGCGAGAGGATGATGAATCTGGAGAACCAGAGGAGGGCACAAGAGCGGGATAGATTGCATGGAAGTGGAGGGGTTGCACCTGACCCATCTGCATATATGGATGTGTCAGGGTCTGCCAGGGTTCCAGGGAGGGAACCAGGAGCGATGGGGGTTCCCAGTTCGCCTAATACAGGCCGAAAGGCCATGATGCCATCTCCCAAACAGGGAGCATCTCCTGGTGATCTGTTTATTGAGCAGCAGGCTCACAACATCCTTCAAAGACACGGCTCCCGTAGCCAGTCAGCCAACCAATGGTCACTTCAGACTGATTCAGAAGGAGACACCCTCTCTCCAATCAACTGGCCTTCCAGAATCCGAGTTAGGGAGAAACTGGCCCGTGACGAGCCATTTCACAGGGGTCATACAACAGAGGTACCTGCGTACAACCAGTTTCCCCAGTCATACCCTCGCTATCACCCTCACAATCGGACCCTCGCTGAGGCTCCAGCCAAACAGCGGCTGACCCACCCTGGACAAGAGGAACGCCATGACCTGGGGTGCCAGAGCTACTTTTCTATGGGTAGCGAATCTGGTTCCAGGCATAAACAAGAGTTTCAGGAAGTACTTGAAATAGAGGGAAAACAGGATGTGAGGACAGAGGGGCTACTGCGGAGCAGGAAGGCCGTTTTACCCTCTGAGGTTCGACGGAAAGAACGGAGCACGGAAGACCCGTGCCGTGGAAGTGCTGACAACGTGGAGATAAACCCAGGCATCAGGAGCGAGGGTGCTGCAGATGACCCCAGAGGGTGGCGTGGAGGTCGGTCAAGGCGGGAAGTTTACACAGAGCATGTGTCCCGTCTTCAGGCCACAGAGTCTATGCAAGCAAGAGCTCGAGAGGCCCATAAAAGGGCTGACGCTATCTGCTACGCCCCAGTTCAGACCTCGAGTGGGAGATATATGCCAAATTCATCCAAACCCCTGGATGTTGGAAATGTCCAAAAGACAGTTTTTCAACAGAACCCTATCCAGGACCCAGTCAGAGAGGCTGTGCCCAATGGCGATCACCCATCCCATGATGCCAGGGTTTCAGTAGCCCAACTCCGCCACACCTACCTGGAAAGTGTTGCGAGTCCCCGGAAAGCCGAGCTGGCAGAAGAGCTGCCTGTGGTCACAGAGGCACCCTGGAGAAGTGAGAGAGTCAAAGATCGGTCATCTCGTCGCCCTTTGCGGTATATATGTCCTACTGAGAATAGAAAGACATCTGAGAGGTTTAGAACTCAGCCAATCACATCAACTGAACGTGAACAGTCGGACCGGTCTTGCCTAAGCCCTGAACCACAGAGCCCTGAGGTGGATGAAGAGAAGCTAGATGAGAGAGCAAAACTGAGTGTAGCTGCCAAGCGCTCTCTCTTCAGGGAGCTGGAGAAGACTTCAGATGGTTCAGTTCTGAAGGTATGGAGCCGTAATCCTGCCGTTGAAAGGAGGTTGAGGAGAGGTCAGGATCGCTCCCGCACTCAGCCAGTCACCTCAGAGGAAGTGGTCATTGCTGCTACTGTCCCTGGCCACCCTGGCCAAACCTCTGTAGCACGTGTTCCTAGTCACACTGTAGTCAACAGCTCTGTGACCAAATTCAGCTTGCAGGCATCGTCTCAGCAAAAGTCCATGGTGAGGGAGCAGGCCAGAGAGGTTCGGCTGGCTGAGGAGGGAGCGGAGACGGATCGGGCTCACCATGCATCTCCAGGGGAGGATGGCCAAGAGGAGCCAGACCTTTCCACGCTCACTCTGGCAGAGAAGATGGCACTCTTCAATCGCCTAGCACAGCCATCCAGCCATGGCCCTCGGGCCAGAGGAGACACTCGTGCACGCAGAAGTAACACCCGGTACCAGACTCAGCCAATCACACTTGGAGAGGTTGAACAGGATGGTTCTGGTTCTGAGATGTTTAACGAGGAATCGGAGTTCTCAGAGGATCTGAGTGATCTGGAACATCTGCAGCCTGCGGGTGGAGCTCGTTTTGCGTCCACCTCTTCCTCAGCCCTGAGATCCTCCACTGTTTCCACTGAACATGCTGGGGACATCCACTTGACCATGTCCAGTGTATCTGGCCCTGCCTACTATGAGCAGACCCTCTCCCCACCTCACCACCCTCAACCTGCCCAAGAGATCCAGACACACCAGAGCCCAGATGTGTCCCCGGCGACCCAAGGAGAGAAGCTGGTATTGAGCATGGGGAAGAGGAAGCTACCCTCTCCAGAGAGCATGAAACAGACACCACACGCTCAGCCGGCCAGAGACTGGGAGGAGCTTAAAGGGCACAATAAGGCTCTGGTGACCCCTCAAGACCTTTCAGAAACAGATGGAGAGCACAAGTCAAAGGCAGCCATGTCAGATCTTCCTGTGCACACAGCCACAGTACGTGCCACGGCAGCTGTATCACACAGCTTATCCTCATTACAGAGCGGCTCTCTTGCACAACACGCGCACGCACAGACACACGCAGTGTCAGCCGGACACCTTCTAGAGGACGACAGGAGAGAAGAGGAGCAGGAGACGGACTTTAAAACAGAGGAAGGAGAAAAACTCTCAGACATCATGTCTGCCAGGCAGATGTCCATCAAAGAGAGACTGGCTCTCTTGAAGAAGAGTGGAGAGGAAGACTGGAGGAACAGGATAAATAAAAAACAGGATGTGGTGCAGGTTGCTGTGTCTGAAAGACACGCCCAGCTATGGGAAGTGGAGCAGAGCTTCAAGAAGGATGATGGGATGATAGATGACTTTGCTGTGTCTGATCAACTCTGGGTAAGGTTGTTGGCCGTTCGCCGCTATGCTAACATGCTTAGCACGGGTATTGCCAGTGATCCTGTCTTTTCCTCCTCCTTTTCATGTGCATCTGAACCACTGGATCAAATAGCAATCCTCCCCAAGGTCCAGGTACAGCAGGGAAAGGAGCCGCCTTGTTTCCTACAGTGCTTCAATGGAGGAATGATTGTTCATGCTGGAAAGAGAGAAGAGGAGGAAGAAAATTTACAAAATGACTGGCGCTTATACTGTGTGAGAGGAGAGAAACCCATAGAGGGCCATCTGCTGGAGGTGGTGTGCCACTGCAGCAGCCTACGGTCTCGCACCTCTTTGATCCTCCTGAACATCCCTAAAGCCAGCATGTACCTGTGGCACGGCTGCAAGGCACAGACGCACACACGTGATGTGGGCCGTACCGCTGCAAACAAAATCAAAGAGCAGTGTCCTCTGGAGGCGGGGCTTCACAGCAGCAGTAAAGTGTCCATCCAGGAGTGTGATGAGGGAGCTGAACCACAAGGCTTCTGGGAGGCCTTGGGAAGGAGAGATCGAAAGGCGTATGACTGCATGCTGCAGGATCCGGGAAAGTTCAACTTCACTCCTCGGCTGTTCCAGTTAAGCAGTGCTTCAGGAGAGTTTGTGGCAGTGGAATTTGCGTATCCATCCAGAGAACCAAATTTGGTCAACTCGATGCCTTTCCTACAGGAGGATTTGTATACAGCTACTCAGCCAGCCCTGTTTTTGGTGGATAATCACCATGAAGTTTACCTGTGGCAGGGCTGGTGGCCTCAGGACAGTGAGAGCACGGGATCAGCTCGCATACGATGGGACTCTGATAGGAAGTGTGCCATGGAAACTGTACTCCAATATAGCAAAGAAAAAAATGAGAAGAAAACTCCAAAATCATACCTGATCCACGCAGGGCTTGAGCCTCTTACCTTCACTAACATGTTTCCCAGCTGGGAACACAGAGAGGACATTGCTGAGATCACAGAGAAGGAGGCTGAAGTATGTAATCAGATCATTCTTGTTGAAGACGTCTTGACTAGACTCTGCAAGACCATTTACCCATTGGCTGATATACAAGCCCGTCCCCTACCAGAAGGTGTTGACCCTCTACGTCTTGAGATCTACCTATCAGATGAGGACTTTGAGGGTGTAGGGGCTTCTGGGAAGAAAGCATTGGAGATGACAAGAAGTGAATATGAGGCACTGCCAGGATGGAAGCAAGTGAATGTGAAGAAAGCCAAAGGATTGTTTTAAAGGAACTAGAGGAAATCTGACTGCATTGGAACTGCTGATTGGGATTGAATTTGCAAGTGGAGACCTTCATTCCTTTTGATTAAGACGGGACAAGCGCAAGTGAAGAAGATCTACCTGTGTCAAACCACACAGGCAGGTGAAAAGCAGCTGGTGGAAGAAGAAAAGGCTGAGATTGGCAAGGGTTTACCAGCCTCTTGTAGCACATTTTTTCCCATTTTCTTCTTTTTTGTTTTTATCAGTGAATTAGTGAGATTGTTTTTTTTTTGTTGAATGTTTTGAGTGCTTCCAGCTTGTTTTCCTCCCGTTTTTATTGTTTTGCGTTGCTCTGTGTCCACATGAAGCCATTTACCATCCAACATGCACTGCCCAGTTTAACATAAAAGCCTTTTAGTAATTATCTGAATGCAAGAAAGCTCAAAAGAGCACTTTATGTAAGTACGTTCATATCTGCTCTCATAAATGACCTCAAGATGTGTTTAACCTTCCAGACAGATGCTTGAACTTGAGAACCCTGCGTGTGTGTACATGGGAGAGTGTATATCTATACAGTGTGTGTGTCTCTTTGAAAAGGATTGAATGAAATTGTGGAATAAGAGAAAATCTCTTTCTATTATGCGTTGTATAGTGCCTTGCCTTCATGTACAGTTTATATAAAGACGGATGCTAGTCTGCATTTTGAAGACATATTTGTGATATAA

Function

symbol description
svil Enables actin filament binding activity. Involved in skeletal muscle tissue development. Located in several cellular components, including actin cytoskeleton; costamere; and cytosol. Implicated in myofibrillar myopathy 10.

GO: NA

KEGG:

id description
K10369 SVIL; supervillin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_04594405_04629754.mRNA True 5365 mRNA 0.51 26 4594405 4630452

Neighbor

gene id symbol gene type direction distance location
CI01000063_04568412_04568747 NA coding upstream 25195 4568284 ~ 4569210 (+)
CI01000063_04544999_04552162 NA coding upstream 42140 4544042 ~ 4552265 (+)
CI01000063_04524187_04533040 NA coding upstream 61039 4523454 ~ 4533366 (+)
CI01000063_04479946_04487899 MTPAP coding upstream 106498 4479824 ~ 4487907 (+)
CI01000063_04345980_04349791 BAMBI, BAMBIA coding upstream 244169 4345980 ~ 4350236 (+)
CI01000063_04633004_04663849 PSME4B, PSME4 coding downstream 1557 4632009 ~ 4664015 (+)
CI01000063_04670608_04680828 ASB3 coding downstream 40156 4670608 ~ 4680901 (+)
CI01000063_04807641_04810737 NA coding downstream 176842 4807294 ~ 4811188 (+)
CI01000063_04878276_04890999 NRXN1, NRXN1A coding downstream 247162 4877614 ~ 4891019 (+)
CI01000063_04896882_04899387 NA coding downstream 265311 4895763 ~ 4899991 (+)
G264206 NA non-coding upstream 98478 4495716 ~ 4495927 (+)
G264205 NA non-coding upstream 99686 4494504 ~ 4494719 (+)
G264204 NA non-coding upstream 100309 4493790 ~ 4494096 (+)
G264158 NA non-coding upstream 121430 4469864 ~ 4472975 (+)
G264164 NA non-coding upstream 128459 4465389 ~ 4465946 (+)
G264960 NA non-coding downstream 125262 4755714 ~ 4756121 (+)
G264946 NA non-coding downstream 127952 4758404 ~ 4872562 (+)
G264997 NA non-coding downstream 383897 5014349 ~ 5014586 (+)
G265004 NA non-coding downstream 393670 5024122 ~ 5024402 (+)
G265005 NA non-coding downstream 396693 5027145 ~ 5027379 (+)
G262436 NA other upstream 1879888 2713615 ~ 2714517 (+)
G262423 NA other upstream 2351440 2241408 ~ 2242965 (+)
G262194 NA other upstream 3449398 1139352 ~ 1145007 (+)
G262060 NA other upstream 3883851 710110 ~ 710554 (+)
G261984 NA other upstream 3927023 665800 ~ 667382 (+)
G265391 NA other downstream 1283331 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 1704826 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019209 LOC106600477 misc CM030124.1 CM030124.1 8847151 ~ 8901878 (-)