CI01000063_04927483_04988999 (NRXN1A, NRXN1)


Basic Information

Item Value
gene id CI01000063_04927483_04988999
gene name NRXN1A, NRXN1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4927483 ~ 4988999 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_04927483_04988999.mRNA
GGCCCCAGCACTACCTGTCAAGAGGATTCTTGCTCCAATCAGGGCGTGTGTCTGCAGCAGTGGGAGGGGTTCAGTTGCGACTGCAGCATGACATCATTTGGAGGGCCGCTCTGCAATGACCCGGGAACCACATACATATTCGGACGTGACGGAGGGCTCATTGTGTACACATGGCCGCCCAACGACAGACCGAGCACACGAGCTGACCGACTGGCTGTCGGCTTTAGCACCCAGCAGAAGGATGCAGTGCTGGTTAGGGTGGACAGCTCTTCCGGCCTGGGAGACTACCTGCAGCTTCAGATTGAAAAAGGCAATATCAGAGTGGTGTTCAATGTGGGCACCGATGACATAAACATTGAAGAAACCTCAAAGTTTGTAAATGATGGAAAGTACCACATAGTTCGCTTTACGAGAAGTGGTGGTAACGCCACCTTGCAGGTGGATGATCTGCCAGTCATTGAGCGCTACCCAACAGGCAACATTGATAACGAACGCCTGGCGATTGCTAGACAGCGAATCCCATATCGGCTTGGTCGAGTAGTTGACGAATGGCTACTCGACAAAGGTCGGCAGCTCACCATCTTCAACAGTCAGACCACCATAAAGATTGGAGGCTGGGAGAAGGGCAGTCGGCCCTTCCAGGGCCAGCTCTCAGGGCTTTACTACAATGGCCTAAAAGTGCTCAACATGGCCGCCGAGGGCGACCCCAACGTGCGTGTGGAGGGTAGTGCCCGGCTGGTGGGAGATATGCCCTCCTCTTCTATTACGCCCCAGTCCAGCGCATCCGCAACGGGCAACCGCTCAGAAACGTCACCCTCCATCACCGACATCACCACTACAACTGCATCCAATCGCCAGGGCAAACAGACGACAACTCCACAGGATGATCTTCTGGTAGCGTCGGCAGAATGTCCCAGTGACGATGAGGACATCGACCCTTGCGACCCAAGTTCAGGTGGGTTAGCTCACCCCCCACTGCCCGAGGCCAAGGGTTACCCCAGCCCGGAGGTGATTCGGGAGTCCAGCAGCACCACAGGCATGGTCGTAGGCATTGTAGCGGCCGCCGCCCTCTGCATCCTAATCCTGCTCTATGCCATGTACAAATACCGAAACCGCGACGAGGGCTCGTACCACGTGGACGAGAGCCGTAACTATATTAGTAATTCTGCCACGCAGCCCAACGGAGCCGCTGTCAAAGAAAAGCCCATTGGCGTGCCCAAAAATAAAAAAGATAAAAAGAACAAGGACAAGGAGTACTACGTC

Function

symbol description
nrxn1a Predicted to enable metal ion binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in caudal vein plexus; diencephalon; hindbrain; spinal cord; and telencephalon. Human ortholog(s) of this gene implicated in Pitt-Hopkins-like syndrome 2. Orthologous to human NRXN1 (neurexin 1).
nrxn1 Enables type 1 fibroblast growth factor receptor binding activity. Involved in several processes, including positive regulation of protein phosphorylation; positive regulation of signal transduction; and regulation of gene expression. Located in cell surface; nucleolus; and plasma membrane. Implicated in Pitt-Hopkins-like syndrome 2.

GO:

id name namespace
GO:0007269 neurotransmitter secretion biological_process

KEGG:

id description
K07377 NRXN; neurexin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_04927483_04988999.mRNA True 1263 mRNA 0.55 7 4927483 4988999

Neighbor

gene id symbol gene type direction distance location
CI01000063_04896882_04899387 NA coding upstream 27492 4895763 ~ 4899991 (+)
CI01000063_04878276_04890999 NRXN1, NRXN1A coding upstream 36464 4877614 ~ 4891019 (+)
CI01000063_04807641_04810737 NA coding upstream 116295 4807294 ~ 4811188 (+)
CI01000063_04670608_04680828 ASB3 coding upstream 246582 4670608 ~ 4680901 (+)
CI01000063_04633004_04663849 PSME4B, PSME4 coding upstream 263468 4632009 ~ 4664015 (+)
CI01000063_05034462_05041925 FSHR coding downstream 45463 5034462 ~ 5043319 (+)
CI01000063_05083449_05083858 NA coding downstream 94450 5083449 ~ 5084210 (+)
CI01000063_05108936_05112439 CALM, CALML6, CALM2, CALM3, CALM1 coding downstream 119937 5108936 ~ 5113069 (+)
CI01000063_05183819_05187667 GCH2, GCH1 coding downstream 194620 5183619 ~ 5188349 (+)
CI01000063_05191319_05197432 PIGF coding downstream 202320 5191319 ~ 5197560 (+)
G264946 NA non-coding upstream 54921 4758404 ~ 4872562 (+)
G264960 NA non-coding upstream 171362 4755714 ~ 4756121 (+)
G264206 NA non-coding upstream 431556 4495716 ~ 4495927 (+)
G264205 NA non-coding upstream 432764 4494504 ~ 4494719 (+)
G264204 NA non-coding upstream 433387 4493790 ~ 4494096 (+)
G264997 NA non-coding downstream 25350 5014349 ~ 5014586 (+)
G265004 NA non-coding downstream 35123 5024122 ~ 5024402 (+)
G265005 NA non-coding downstream 38146 5027145 ~ 5027379 (+)
G264948 NA non-coding downstream 81452 5070451 ~ 5074125 (+)
G264945 NA non-coding downstream 95881 5084880 ~ 5085892 (+)
G262436 NA other upstream 2212966 2713615 ~ 2714517 (+)
G262423 NA other upstream 2684518 2241408 ~ 2242965 (+)
G262194 NA other upstream 3782476 1139352 ~ 1145007 (+)
G262060 NA other upstream 4216929 710110 ~ 710554 (+)
G261984 NA other upstream 4260101 665800 ~ 667382 (+)
G265391 NA other downstream 924784 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 1346279 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001917 NA coding CM030143.1 CM030143.1 19507997 ~ 19511624 (-)