CI01000063_05034462_05041925 (FSHR)


Basic Information

Item Value
gene id CI01000063_05034462_05041925
gene name FSHR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5034462 ~ 5043319 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_05034462_05041925.mRNA
GGAGATCAAACTGACTCAGATCAGCGTGTTTCACCGAGCAGCCCTGTCTGAACTACATGAGCTGAAGAGAATAGTGGTGTCCGAGAATGGTGCTCTTGAGCAAATTGAAGCCTTTGCCTTTTCCAACCTGACAGAGCTACAGGAAATGTATGTTGCTGCACTGCGTGTGGAAATAACGTCCAATCACATTCTTGTCAACCCATTTGAATCAAATGGTGCACACTTTAAAGGGAGTATATTCCCACATGAGTTTCAGCCTAGCATTGAGTTATGGACTATATCAAACACTGGTCTTAAAATCCTGCCTGATTTTTCAAAAATCAACTCTGCTGCTCTTGAATTTCTATTGAGATTAACAAAGAATGGGATCCGTGAGATAGACATCTATGCATTCAACGGTACCAAAATTGAGAAACTCTTTCTCATGGGAAACCAGCAGCTGAATCATATCCACAGTTACGCCTTTATAGGAGCTGAAGGCCCCATCGTTCTGGACATCTCACGTACTGCCGTCCACACACTACCGGAAAGCATGCTGAGGACCCTTAAGCTTCTGACAGCCGTCTCAGTCTACTCTCTAAGGAGGCTTCCAAGCCTGGAGCTGTTTACTGAGCTCACGCAGGCCAATCTGACCTACCCCAGCCACTGCTGTGCCTTCAAAAACTTCAAGAAGCACAAGTCTGTGAAGAATCAAATGTGTAACGATCCTGGTGCCCTCCGCCTGGAGCCAGATTTTTTCGAAGACCACTGTAAGGATGTGATAGAAGTGACCTGCTACCCCACACCAGATGCATTCAACCCTTGCGAGGACATCATGGGTTTTACGTTCCTACGTGTTCTGATCTGGTTCATCAGCATACTGGCCATCGTGGGAAATGTTGTTGTCCTCCTGGTGCTCCTCACCAGTCACTACAAACTAACCGTTCCCAGGTTCCTAATGTGCCACTTGGCTTTCGCAGACCTTTGCATGGGAATTTACCTGTTGCTTATCGCCGGCGCAGACATTTACACACAGTCCCACTACTACAACTATGGCATCGACTGGCAGACGGGAGCAGGCTGCCATGTGGCCGGCTTCTTCACGGTCTTCTCCAGCGAGCTCTCCGTCTACACCCTGACTGCCATTACCCTGGAGCGCTGGTACACCATCACTTATGCCATGCATCTGGAACGCAAGCTGCGTCTGCGCCATGCCTGCGCAGTAATGACAGCGGGGTGGATTTTCGCCCTGCTGACTGCTCTGATGCCCATGTTGGGAGTGAGCAGCTACAGGAAGACGAGCATCTGCCTGCCCATGGATGTAGAAACAATGCTTTCACAAGGATACGTAGTGCTGTTGCTCCTACTCAACGTAGCCGCTTTTCTGGTTGTGTGTGTCTGTTATATGCGCATCTACCTGACCGTCCACAATCCTGCCTTCGTTCCTGCCAACGCAGACATGCGTATAGCCAAGCGCATGGCCGTGCTCATCTTCACCGACTTCCTGTGTATGGCGCCTATCTCATTTTTCGCCATCTCCGCAGCCTTAAAACTACCGCTAATCACAGTTTCTCACGCCAAAGTCTTGCTGGTGCTTTTTTACCCCATAAATTCCTGCTCAAACCCATTTCTCTACTCCTTCTTAACTAAAACCTTCAAGAGGGATTTCTTCATTCTGACTAGCCGGTTCGGCTGCTTCAAAACACGTGCACACATTTACCGCACAGAGATTTCTTTGGGGGAAAACGGAGCCATGGTGCCTTCGCCAAAGATTAGTGATGGAACACTGTACTCTCTGGTGCACATCGCCCAAGTGCACTGACCACTAACTCAATCCACCATAACTCTGGTGTGACCAGCTGAAACCGTATGCTGCTTGTAGGCAAAAAAGAGGATAAATAAGGAAAATGTGCAATCTAGATATAAAAATTTTGAAGGTTTCTACGGCATGAAATTGGGTAAAGGCGTCTCATAAAGATATTATAGTGCTTGACCTCTCAAGCCAACCTATTCAGATGTCTTTAGAAGTATTCACACCATTCACGAAATGCTGCTTGATTGACTTTTGACATATTCCGCATGCATTAGTGTTCAAAAATTGAGATTAGGCTATATCTATAGTATGAATAATGTAATCATTTAAGATAGATATTTTAGAAATTTTGAAAAATGTTTTAGTGGTTTTTCCATACAATGAAAAATAACAAAAGTAATTGAAACACAGAATATCTTTTGTGATCCATGGAAGAAAGTCATACAAGTTTGATAATAAATGATGATAGAGTTTTCATTTTTGGTTGAACTATCCCATTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCTACACCCGTAAGACCTTCGTTCATCTTCAGAACACAAATTAAGATATTTTTGATAAAATCCGATGGCTCAGTGAGGCCTCCATTGACAGCAAGGTAATTAACACTTTCAAATGCCCAGAAAGCTACTAAAGACGTATTTAAAACAGTTCATGTGAGTACAGTGGTTCAACCTTAATGTTATGAAGCGACGAGAATACTTTTTGTGTGCCAAAAAAAACAAAATAACGACTTTATTCAACAATATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGTTTGATACACGCTCCGAACCACTGATTCGAAACAAAAGATTCGTAAAGCTTCAAAGCTTCATGAAGCATTGTTTTAAAATCAGTCATCACTAGATATTGTTGAATAAAGTCGTTAATTTGTTTTGTTTTTTTGGAGCACAAAAAGTATTCTCGTCGCTTCATAACATTAAGGTTAAACCACTGTAGTCACATTAACTGTTTTAAATATGTCTTTAGTAACTTTCTGGGCATCTGAAAGTGTTAATTATCTTGCTGTCAAAAGAGGCCTCGCTGAGCCATTGGATTTTATCAAAAATATCTTAATTTGTGTTCCGAAGATGAATGAAGGTCTTACAGTTGCGAAACGACATGAGGGTGGGTAATTAATGACAGAATTTTCATCTTTGGGTGAACTAACCCTTTAAGGCTTGTGCTGATACTGCTGGCAA

Function

symbol description
fshr Enables follicle-stimulating hormone receptor activity. Acts upstream of or within male gonad development; ovarian follicle development; and spermatogenesis. Predicted to be located in basolateral plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in Leydig cell; female organism; gonad; and kidney. Human ortholog(s) of this gene implicated in 46 XX gonadal dysgenesis; ovarian dysgenesis 1; and ovarian hyperstimulation syndrome. Orthologous to human FSHR (follicle stimulating hormone receptor).

NR:

description
follicle-stimulating hormone receptor

GO:

id name namespace
GO:0009755 hormone-mediated signaling pathway biological_process

KEGG:

id description
K04247 FSHR; follicle stimulating hormone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_05034462_05041925.mRNA True 3195 mRNA 0.41 8 5034462 5043319

Neighbor

gene id symbol gene type direction distance location
CI01000063_04927483_04988999 NRXN1A, NRXN1 coding upstream 45463 4927483 ~ 4988999 (+)
CI01000063_04896882_04899387 NA coding upstream 134471 4895763 ~ 4899991 (+)
CI01000063_04878276_04890999 NRXN1, NRXN1A coding upstream 143443 4877614 ~ 4891019 (+)
CI01000063_04807641_04810737 NA coding upstream 223274 4807294 ~ 4811188 (+)
CI01000063_04670608_04680828 ASB3 coding upstream 353561 4670608 ~ 4680901 (+)
CI01000063_05083449_05083858 NA coding downstream 40130 5083449 ~ 5084210 (+)
CI01000063_05108936_05112439 CALM, CALML6, CALM2, CALM3, CALM1 coding downstream 65617 5108936 ~ 5113069 (+)
CI01000063_05183819_05187667 GCH2, GCH1 coding downstream 140300 5183619 ~ 5188349 (+)
CI01000063_05191319_05197432 PIGF coding downstream 148000 5191319 ~ 5197560 (+)
CI01000063_05223875_05227171 NA coding downstream 180556 5223875 ~ 5227171 (+)
G265005 NA non-coding upstream 7083 5027145 ~ 5027379 (+)
G265004 NA non-coding upstream 10060 5024122 ~ 5024402 (+)
G264997 NA non-coding upstream 19876 5014349 ~ 5014586 (+)
G264946 NA non-coding upstream 161900 4758404 ~ 4872562 (+)
G264960 NA non-coding upstream 278341 4755714 ~ 4756121 (+)
G264948 NA non-coding downstream 27132 5070451 ~ 5074125 (+)
G264945 NA non-coding downstream 41561 5084880 ~ 5085892 (+)
G265040 NA non-coding downstream 92572 5135891 ~ 5136247 (+)
G265041 NA non-coding downstream 93022 5136341 ~ 5136689 (+)
G265042 NA non-coding downstream 94284 5137603 ~ 5137907 (+)
G262436 NA other upstream 2319945 2713615 ~ 2714517 (+)
G262423 NA other upstream 2791497 2241408 ~ 2242965 (+)
G262194 NA other upstream 3889455 1139352 ~ 1145007 (+)
G262060 NA other upstream 4323908 710110 ~ 710554 (+)
G261984 NA other upstream 4367080 665800 ~ 667382 (+)
G265391 NA other downstream 870464 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 1291959 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004725 fshr coding NC_007123.7 CM002896.2 24738962 ~ 24770190 (+)
bowfin (Amia calva) AMCG00001913 NA coding CM030143.1 CM030143.1 19311038 ~ 19323661 (-)