CI01000063_05083449_05083858


Basic Information

Item Value
gene id CI01000063_05083449_05083858
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5083449 ~ 5084210 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_05083449_05083858.mRNA
GTCCCCGTCTCACCTCTTTCTGCGTTGTTTCTTTCCGGCTGCACCGGGCGCGGCCTCGACACTCGCCTGGGTCTCCTGCTGCTCGCTCTGACGGAGTTCATTTGGCGAGCATTTACACAAATCTCTGGTCTGAAACAAGTCAAATCAACCGTCTACGCCGAAAAAGGACACCAACCCGGGGCAGTTTTTCTTATTCGGGGTGTTGTTGCAGGAGGAGCCATTAACATGGACATGGAGAACATGCACAAGGGGGCACCACTGATATCCAGCAAGAGTAACATTGATTAATTCCTTTTAAATATTGATCCTCCAATCTTGTATAAGTTTTAAAATGTGAACAGCTCTGGTACCATGACACTGAGATTACAACTGTGTAAAAGCCTTCCCTGATAATTAAAAAAAAAAAACATCAGGGAAGGCTAAACTGGTCTTCCAGGCTGGTCAAGATAGCAGAAAATGGGTTAAGATTCTGAGAGACCTGTTATACTAGTTGAGCACAAGTTTGGCCAGGCTGGGAGACCAATTATACCATCTTAAACCAGCTAAGACCAGCAAAATATCTTATTCTGGTTTAAGATGTTTGTGTTAGAAAACAAACACACCTGAAAGCATTACTCTAACAAACTCGACCAATTAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_05083449_05083858.mRNA True 640 mRNA 0.44 3 5083449 5084210

Neighbor

gene id symbol gene type direction distance location
CI01000063_05034462_05041925 FSHR coding upstream 40130 5034462 ~ 5043319 (+)
CI01000063_04927483_04988999 NRXN1A, NRXN1 coding upstream 94450 4927483 ~ 4988999 (+)
CI01000063_04896882_04899387 NA coding upstream 183458 4895763 ~ 4899991 (+)
CI01000063_04878276_04890999 NRXN1, NRXN1A coding upstream 192430 4877614 ~ 4891019 (+)
CI01000063_04807641_04810737 NA coding upstream 272261 4807294 ~ 4811188 (+)
CI01000063_05108936_05112439 CALM, CALML6, CALM2, CALM3, CALM1 coding downstream 24726 5108936 ~ 5113069 (+)
CI01000063_05183819_05187667 GCH2, GCH1 coding downstream 99409 5183619 ~ 5188349 (+)
CI01000063_05191319_05197432 PIGF coding downstream 107109 5191319 ~ 5197560 (+)
CI01000063_05223875_05227171 NA coding downstream 139665 5223875 ~ 5227171 (+)
CI01000063_05271158_05276999 NA coding downstream 186948 5271158 ~ 5277105 (+)
G264948 NA non-coding upstream 9324 5070451 ~ 5074125 (+)
G265005 NA non-coding upstream 56070 5027145 ~ 5027379 (+)
G265004 NA non-coding upstream 59047 5024122 ~ 5024402 (+)
G264997 NA non-coding upstream 68863 5014349 ~ 5014586 (+)
G264946 NA non-coding upstream 210887 4758404 ~ 4872562 (+)
G264945 NA non-coding downstream 670 5084880 ~ 5085892 (+)
G265040 NA non-coding downstream 51681 5135891 ~ 5136247 (+)
G265041 NA non-coding downstream 52131 5136341 ~ 5136689 (+)
G265042 NA non-coding downstream 53393 5137603 ~ 5137907 (+)
G265049 NA non-coding downstream 61288 5145498 ~ 5145762 (+)
G262436 NA other upstream 2368932 2713615 ~ 2714517 (+)
G262423 NA other upstream 2840484 2241408 ~ 2242965 (+)
G262194 NA other upstream 3938442 1139352 ~ 1145007 (+)
G262060 NA other upstream 4372895 710110 ~ 710554 (+)
G261984 NA other upstream 4416067 665800 ~ 667382 (+)
G265391 NA other downstream 829573 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 1251068 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005358 fbxo11a coding NC_007123.7 CM002896.2 24841719 ~ 24904944 (-)