CI01000063_05108936_05112439 (CALM, CALML6, CALM2, CALM3, CALM1)


Basic Information

Item Value
gene id CI01000063_05108936_05112439
gene name CALM, CALML6, CALM2, CALM3, CALM1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5108936 ~ 5113069 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_05108936_05112439.mRNA
GGTGGAATTCACAACGACTCAGGTGATTCCCTATTTCATCTCTAAGTTAAATGGCATTTACGACCGGGAAAATTCTACAGTGTGTGACCAGGGAGTGACGCATTGCAGACGGAGGGAGACTGACAGAGAAAAAGAGAAAATGGCCGATCAACTCACAGAGGAGCAAATAGCCGAGTTCAAAGAGGCGTTCTCGCTATTTGACAAAGATGGGGATGGTACCATCACCACGAAAGAGCTGGGCACTGTTATGCGCTCTCTTGGCCAGAACCCTACAGAGGCAGAGCTGCAGGATATGATCAATGAGGTGGATGCAGATGGAAATGGAACAATAGACTTTCCCGAGTTCCTGACGATGATGGCAAGAAAGATGAAGGACACCGACAGCGAGGAGGAGATCAGAGAAGCTTTCCGTGTCTTTGATAAGGATGGGAATGGATATATCAGTGCTGCTGAGCTGCGCCATGTGATGACAAACTTGGGGGAGAAATTAACAGATGAGGAGGTGGATGAAATGATTAGAGAAGCAGACATTGATGGAGATGGTCAGGTCAATTATGAAGAATTTGTACAGATGATGACAGCGAAGTAAAGGCCTTGTACAGAATTTCTTGTATAAAATTATCTGCCTTTTCTTGTTTTTAATTTCTGTAAAATGTTTAATTTTAATTTTCCCCCATCCTCTCCTGCTGTCCAAAGGATTTGCATGTATACTATAAGATTTGAGTGCTCATGCCTTCCCCCAACTCCTAGACATTGTAAACAATCTGTTAGAGGGAGCAGTTATGGGACCAGGTGATACATATAGGCACAGATATTGACTACGCACAGGCCCCTTTCCCCTTCTGTTGCTCTGTCTGCCTGCCCACCTGACGAGCGGTGACATCAAGGGTCCAGCTGACTGACAGTGTGGCGTCATTTCAACAATTTTGGCATGACTCTTTTTTTTTTTTTTTTTTTCCTCTTGATTTTATGTGGAGGTGCAACTCTGAATGGACAATGGACTGCGTATAAATAGAAATGGGGAAAGTCCTCAGCTTTGCACTATTGCAACATCATTGAATTCAATACTAACGGGTTTATCGCCAGGTACTCATACACTCTAATCTTTTTGTATTTGTTCTGTTCTTACTATGCTTTTTAATTAGTCACTTTTCTTTTGTAACTGCTTATGGCACAGCCATGCCTCAGAATCCATTCCAAGTTGTATATTTGTTTTCCA

Function

symbol description
calm1 Enables several functions, including N-terminal myristoylation domain binding activity; enzyme activator activity; and enzyme binding activity. Involved in several processes, including positive regulation of hydrolase activity; regulation of calcium ion transmembrane transport; and regulation of heart contraction. Located in microtubule cytoskeleton and sarcomere. Part of calcium channel complex and catalytic complex. Implicated in catecholaminergic polymorphic ventricular tachycardia 4 and long QT syndrome 14. Biomarker of Alzheimer's disease.
calm2 Enables several functions, including N-terminal myristoylation domain binding activity; enzyme activator activity; and enzyme binding activity. Involved in several processes, including positive regulation of hydrolase activity; regulation of calcium ion transmembrane transport; and regulation of heart contraction. Located in microtubule cytoskeleton and sarcomere. Part of calcium channel complex and catalytic complex. Implicated in long QT syndrome 15. Biomarker of major depressive disorder.
calm3 Enables several functions, including N-terminal myristoylation domain binding activity; enzyme activator activity; and enzyme binding activity. Involved in several processes, including positive regulation of hydrolase activity; regulation of calcium ion transmembrane transport; and regulation of heart contraction. Located in microtubule cytoskeleton and sarcomere. Part of calcium channel complex and catalytic complex. Implicated in familial hypertrophic cardiomyopathy.
calml6 Predicted to enable calcium ion binding activity and enzyme regulator activity. Predicted to be involved in regulation of catalytic activity. Predicted to be located in cytoplasm and nucleus.
calm calmodulin; clathrin coat assembly protein AP180

GO:      GO:0005088, GO:0048306, GO:0000086, GO:0007190, GO:0006936, GO:0030426, GO:0017022, GO:0010800, GO:0035307, GO:0030017, GO:0034704, GO:0021762, GO:0051412, GO:0022400, GO:0043388, GO:0071902, GO:0044325, GO:0007223, GO:0005876, GO:0005737, GO:0031432, GO:0031982, GO:0008440, GO:0002576, GO:0005980, GO:0005813, GO:0005634, GO:0032516, GO:0000165, GO:0015276, GO:0000922, GO:0005654, GO:0002027, GO:0005509, GO:0043005, GO:0032465, GO:1901841, GO:0007186, GO:0030234, GO:1901844, GO:0051343, GO:0005515, GO:0031800, GO:0010801, GO:0030235, GO:0008076, GO:0051592, GO:0060315, GO:0060316, GO:0043274, GO:0019904, GO:0005886, GO:0008179, GO:0055117, GO:0043539, GO:0043547, GO:0050999, GO:0050998, GO:0038095, GO:0031996, GO:0047485, GO:0034220, GO:0070062, GO:0005829, GO:0031997, GO:0030801, GO:0001975, GO:0043647, GO:0005513, GO:0072542, GO:0005576, GO:0010881, GO:0010880, GO:0051000, GO:0031954, GO:0043548, GO:0019901

KEGG:

id description
K02183 CALM; calmodulin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_05108936_05112439.mRNA True 1219 mRNA 0.43 7 5108936 5113069

Neighbor

gene id symbol gene type direction distance location
CI01000063_05083449_05083858 NA coding upstream 24726 5083449 ~ 5084210 (+)
CI01000063_05034462_05041925 FSHR coding upstream 65617 5034462 ~ 5043319 (+)
CI01000063_04927483_04988999 NRXN1A, NRXN1 coding upstream 119937 4927483 ~ 4988999 (+)
CI01000063_04896882_04899387 NA coding upstream 208945 4895763 ~ 4899991 (+)
CI01000063_04878276_04890999 NRXN1, NRXN1A coding upstream 217917 4877614 ~ 4891019 (+)
CI01000063_05183819_05187667 GCH2, GCH1 coding downstream 70550 5183619 ~ 5188349 (+)
CI01000063_05191319_05197432 PIGF coding downstream 78250 5191319 ~ 5197560 (+)
CI01000063_05223875_05227171 NA coding downstream 110806 5223875 ~ 5227171 (+)
CI01000063_05271158_05276999 NA coding downstream 158089 5271158 ~ 5277105 (+)
CI01000063_05281800_05302429 NA coding downstream 167586 5280655 ~ 5302499 (+)
G264945 NA non-coding upstream 23044 5084880 ~ 5085892 (+)
G264948 NA non-coding upstream 34811 5070451 ~ 5074125 (+)
G265005 NA non-coding upstream 81557 5027145 ~ 5027379 (+)
G265004 NA non-coding upstream 84534 5024122 ~ 5024402 (+)
G264997 NA non-coding upstream 94350 5014349 ~ 5014586 (+)
G265040 NA non-coding downstream 22822 5135891 ~ 5136247 (+)
G265041 NA non-coding downstream 23272 5136341 ~ 5136689 (+)
G265042 NA non-coding downstream 24534 5137603 ~ 5137907 (+)
G265049 NA non-coding downstream 32429 5145498 ~ 5145762 (+)
G265054 NA non-coding downstream 37862 5150931 ~ 5151217 (+)
G262436 NA other upstream 2394419 2713615 ~ 2714517 (+)
G262423 NA other upstream 2865971 2241408 ~ 2242965 (+)
G262194 NA other upstream 3963929 1139352 ~ 1145007 (+)
G262060 NA other upstream 4398382 710110 ~ 710554 (+)
G261984 NA other upstream 4441554 665800 ~ 667382 (+)
G265391 NA other downstream 800714 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 1222209 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004727 calm3a coding NC_007123.7 CM002896.2 24952902 ~ 24958792 (+)