CI01000063_05271158_05276999


Basic Information

Item Value
gene id CI01000063_05271158_05276999
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5271158 ~ 5277105 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_05271158_05276999.mRNA
AGGACCTGGAAGAAGAGAAGGAAAGCCCCTCAGAGCCAGAACTCTCTGAAAAACAGAAACATCAGCTTCGCCACAGAGAGCTTTTCCTTTCCCGCCAGTACGAATCCCTCCCTGCCACACACATCAGTTCAAATTTTCAGGGGGCAGTTGAGAGGATCTGTGGAGACAGCTGGATGCAGAACATAACACATGGGGCTGCATGTTTTAATCTTTTATTATCTTTTTTCTTCTGGGGTGGTGGAAATAGGGGCAAGTGCAGTGTAGCCCTCCTGAACGAGACAGAAGCTGTGCTCTCCTACCTTGAGAAAGAGAAGACACTATTGGCCGATAAGGGCGAGATTCGCGTTGGTCCACGTTTTCAGGCTGATGTCCCAGAAATGCTACAGGAAGATCAAGAAGCAGTTGTCCGAACACAGTATGGTGATACAGAATGGTTCAAAATTGAAAGGGGTGTGAGACAAGGTATTCTCTCCCCATTTCTCTTTAATCTTTATGCTGAAATGATCATGAGGAAATTATGTCTGGAAGAGTTGGAAATAGGTGTGAAGATTGGTGGCAGAAATATCAATAATCTCCATTATTCTGATGATACAGCCTTATTAGCAGAAACTGAAAAAGGTCTAAAACAGCTTATAATAAAAATTCAAAAGGAAAGTGAAAAGATGGGACTCCACTTTAAAATTAAAAAGACAGCCAGCTAGAACCGGAGCAATTAAAGTGACCATCAACAGAGAAGACATTGAATGCGTTAATGACTTCTGCTTCTTGGGTTCTATGATTGACCAAATTTAGGACTGCACACTTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_05271158_05276999.mRNA True 807 mRNA 0.43 5 5271158 5277105

Neighbor

gene id symbol gene type direction distance location
CI01000063_05223875_05227171 NA coding upstream 43987 5223875 ~ 5227171 (+)
CI01000063_05191319_05197432 PIGF coding upstream 73598 5191319 ~ 5197560 (+)
CI01000063_05183819_05187667 GCH2, GCH1 coding upstream 82809 5183619 ~ 5188349 (+)
CI01000063_05108936_05112439 CALM, CALML6, CALM2, CALM3, CALM1 coding upstream 158089 5108936 ~ 5113069 (+)
CI01000063_05083449_05083858 NA coding upstream 186948 5083449 ~ 5084210 (+)
CI01000063_05281800_05302429 NA coding downstream 3550 5280655 ~ 5302499 (+)
CI01000063_05400578_05406105 PPM1BB, PPM1B coding downstream 123473 5400578 ~ 5406277 (+)
CI01000063_05466326_05468126 SIX3, SIX3A, SIX3B, SIX3.L coding downstream 188947 5466052 ~ 5469282 (+)
CI01000063_05490285_05556254 PRKCEA, PRKCE, PRKCEB coding downstream 213180 5490285 ~ 5556462 (+)
CI01000063_05563124_05584474 NA coding downstream 286019 5563124 ~ 5585104 (+)
G265046 NA non-coding upstream 111742 5155129 ~ 5159416 (+)
G265059 NA non-coding upstream 116441 5154191 ~ 5154717 (+)
G265058 NA non-coding upstream 116984 5153835 ~ 5154174 (+)
G265057 NA non-coding upstream 117699 5153152 ~ 5153459 (+)
G265056 NA non-coding upstream 118365 5152413 ~ 5152793 (+)
G265096 NA non-coding downstream 30840 5307945 ~ 5308294 (+)
G265104 NA non-coding downstream 37124 5314229 ~ 5314511 (+)
G265109 NA non-coding downstream 42527 5319632 ~ 5319863 (+)
G265114 NA non-coding downstream 48898 5326003 ~ 5326336 (+)
G265126 NA non-coding downstream 65109 5342214 ~ 5342446 (+)
G262436 NA other upstream 2556641 2713615 ~ 2714517 (+)
G262423 NA other upstream 3028193 2241408 ~ 2242965 (+)
G262194 NA other upstream 4126151 1139352 ~ 1145007 (+)
G262060 NA other upstream 4560604 710110 ~ 710554 (+)
G261984 NA other upstream 4603776 665800 ~ 667382 (+)
G265391 NA other downstream 636678 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 1058173 6335618 ~ 6338283 (+)

Expression


Co-expression Network