CI01000063_05563124_05584474


Basic Information

Item Value
gene id CI01000063_05563124_05584474
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5563124 ~ 5585104 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_05563124_05584474.mRNA
GTTAATGGTTTGCCATGCATGTCAGACTTTCAGAATGAGGGAACAGTGTGCAGTGTTGAAGTCAAGCGCAATGTTGCATTGTGCAAATTTTACACTGCACTTGATTTCTCCTCATTAAGACCTGATGGGGTTTCATTTATGGTTAGAGACAGAAAGCAGCACCCTTCAGAAAGGCGCAAGGAAAAGTCTCGTGATGCAGCACGCTGCAGGCGCAGTAAGGAGACAGAGGTGTTCTATGAGCTGGCCCATCAGCTGCCGTTACCCCACAGCATCAGCTCGCACCTGGACAAAGCCTCCATCATGAGACTAGCTATCAGCTTCCTGCGCACACGCAAACTCTTCAACTCAGGCCGCACAGTCCAACAAACCCGGTACCAGGATGACAGCCAGATGGACAGTCTATATCTGAAGTCTCTGGAAGGCTTTGTTGCTGTGGTAACATCAGATGGGGACATGATATTCCTTTCAGAAAATGTCAGTAAATTTATGGGCCTTACGCAGGTGGAACTGACAGGCCACAGTATCTTTGACTTCACACACCCCTGCGATCATGAAGAAATCAGAGAGAATCTCAATGTCAAATCAGCAGTGTTTGCTTGCTCACAGACACATACTCAGAATGAGAGACCTGTGTATGGCAGAAGAGGTAAAGACATGAGCACGGGCAGAGATTTCTTTATGAGGATGAAGTGTACGGTCACCAACAGAGGGCGCACTGTCAACCTTAAATCAGCCAGCTGGAAGGTCAGTATTGGAAACTCTTATCATAATTCTGTTGTGCTTCTACTTGCATTGCTATCAGTGTGTGTGCAAGTTGAAAAACAGACATTAAAGATAATGATCAGACAGAACAAAGTCAGCAGCCTGATCGGATACAGACCAGAGGAACTTCTTGGCCGTTCGGTGTATGAGTTCTGCCATGCTTTGGATTCTGAAAGCATGACAAAGAGCCACCAAAATCGTAAGTACCTGTCTACATCCAACAAAAACAAAGCCAGGAAACACAAAAACATTAAAATTTGTAATAAGGGGCAAGTGGTGAGTGGCCAGTACAGAATGCTAGCCAAGCACGGGGGCTACGTTTGGGTTGAGACCCAGGCAACCGTCATCTACAACAATCGCAACTCCCAACCACAGTGCATCATCTGCATCAATTACGTCCTGAGTTCTGTTGAGGAGCAGTCCCTCGTCTTTTCGCTGGATCAGACGGAGGCTCTTTTCAAGCCCTACCACATGCGTAGCATGGGAGAACTGTTCAGCCAGGGTGGAGCTTCCTCCGTTTCAGAAGCTCAGGACATTCTTTATACTAAGCTCAAGGAGGAGCCTGAGGAGTTAGCTCAGTTAGCGCCCATGCCAGGAGACGCCATCATTGCCCTGGACTTTGAAAGGCCAGAGTTTGATGAACCGACGTACTTCTCCAAGTCCACCAAGCTTCCATCGTGGGTTGTGGACACACCCCCTGAGGGCAGTCCTGATAGAAACCTGTCCAGCATGCCCTCTACCTTCAGCGTACCCCAGGTGCCTCCTGTGGGCAAGTGCACACCCTGTACCACACCCTGCTTGAGTGGCTGCAGCAGATGTTCTACACCTAGCAGTCCAGTAGATTACTGTGGCAGTGGAGAGTGTGATCTGAAGGTGGAGCTGACAGAGAAGCTATTTACTCCTGAATCTGTAGCAACAAATCCCACTGAGTCCCAGTTGGACCTGAGCGATCTGGACCTGGAGACTCTTGCTCCATATATCCCAATGGACGGTGAAGACTTCCAGCTGCACCCCATTTGTCTGGAGGAGCCGGTGCCTGACACAAGTCCAGGCCTGAGCACAGCCCTCCAGCACAGCTTCAGCAGTGTAGCTGACCTCTTCCAGCCCCTGAGTCCATTCCCTCCTGTCAACAAAAGCAGTCCTAACACGTGTCCAGACACGGCTCATGTGCAGCCTTACCAAACCGCACCAAACGTCCCTCTCTCTTCTGAAGAGGGTAGACAGAGTCTTCAGTGGCCTCCTGACCCACCCTCACAGTACGAACGCACAGATATTGGATGCATGGATGACAGAAACACAGCAGATCCAAGACAAACATGCAGTTTCACTGCTGCACTGCCACAGCAAAGGTTTTTTGAGAGCTTTGCCCCTGTACAGAAGGGCATGAGTGTGGGGCAGATCGCTCTCCTCAACAACTTCAAACGGAAGTGGCCGTCAGAGTTTGGTTCATCGTGCTCTTTCTCAGATATTCCAAAGGTGGTACCCCCTCACAAGTCTGCAGATGGAATGCGAAAAAGGATGAAGACGATGAACGTCGACAGCTGCGCCTTCTCTGTCAGAAAGTCTCTCAGCACGAGTGTGCTCACAGATAAATTTCCATGCATGCAAAATGGATTGGTTTCTCGTCACAGCTGGAGTCAATCTCTCAAAGGGACCTCAGATGACCTTAAACAGCATTTCACAGAGTCATTCTGCTCTCCCAGTAACAGACAATACCACATGATGCCTTCACACAAACACTCAGGCATGATAAGTCAACTGTTGGGCCCATCCTTTGACTTGTACTGTCTGCCAGAGCTGACAAGATATGACTGCGAGGTAAACGTGCCTCTACAGGGAAACTTGCATCTGCTTCAGGGCAGAGACCTTCTGAGAGCCTTGGACCAGTCCAAGTAGACTCAGAGCTTCTTCAGTGATCCATTCACCCAATGTGTTTTCATCCCAACTTTGTCTATATATGCTTTTGTCTTGTACGCATGTATTATCAGCCTTTATTTAGACCTATTTGTACATTTTCCTTTAACATCTGTGTGATATTTTAATATATATTTGAAAAATCAGATTGTTACTTGTTTAGAATGTGTTGGGACGTACCACGTTCTGTGCTACTATCTTAGACTCTAATATTGTCTTGTGCCTTCAGATGCTAAGTGTTCTTAACATTTATGGTCAGATTTACCAGATTCACTGTTGCAGAATTTAATATGTATATGAATATCAACTAACTAGAGCATATAAAAAATATAATATCATATAGAGTTTAAATGGTAGTTTAATTTGTAACTTATTCATGGAGCTTGGTATACAAATACTGTGTTTGTATAAATCAAAGAGAGTTAAATGTTTTGCAAAAACTATTGCCTTAAATATAAGCTTCGAATTTGTACCAGCAACAAATGTGGCGTAAAACTGTGTCGCTTGGAAATGTGTCTGTTTTCCCGTTTAGAATCCATTAGTAGTGGAATCTTATGCCTCAGCTTTCCCCTACATTCCCCTCAACACAATCATAATGACAAAAATGCTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_05563124_05584474.mRNA True 3288 mRNA 0.46 19 5563124 5585104

Neighbor

gene id symbol gene type direction distance location
CI01000063_05490285_05556254 PRKCEA, PRKCE, PRKCEB coding upstream 6662 5490285 ~ 5556462 (+)
CI01000063_05466326_05468126 SIX3, SIX3A, SIX3B, SIX3.L coding upstream 93842 5466052 ~ 5469282 (+)
CI01000063_05400578_05406105 PPM1BB, PPM1B coding upstream 156847 5400578 ~ 5406277 (+)
CI01000063_05281800_05302429 NA coding upstream 260625 5280655 ~ 5302499 (+)
CI01000063_05271158_05276999 NA coding upstream 286019 5271158 ~ 5277105 (+)
CI01000063_05597755_05613489 GDH1, GLUD1B, GLUD1A, GDH2, GDH3.2, GLUD1, GDH03, GDH01, GLUD1.S coding downstream 12220 5597324 ~ 5614654 (+)
CI01000063_05639341_05650366 NA coding downstream 54186 5639290 ~ 5650682 (+)
CI01000063_05673923_05678546 NA coding downstream 88725 5673829 ~ 5678725 (+)
CI01000063_05894405_05894580 NA coding downstream 309301 5894405 ~ 5894677 (+)
CI01000063_05922194_05935361 ITGB3B, ITGB3 coding downstream 337090 5922194 ~ 5936249 (+)
G265198 NA non-coding upstream 72318 5490577 ~ 5490806 (+)
G265173 NA non-coding upstream 127484 5435399 ~ 5435640 (+)
G265142 NA non-coding upstream 180200 5382707 ~ 5382924 (+)
G265141 NA non-coding upstream 180645 5382191 ~ 5382479 (+)
G265094 NA non-coding upstream 195858 5360934 ~ 5367266 (+)
G265156 NA non-coding downstream 83798 5668902 ~ 5689574 (+)
G265153 NA non-coding downstream 105112 5690216 ~ 5712916 (+)
G265246 NA non-coding downstream 119989 5705093 ~ 5706882 (+)
G265252 NA non-coding downstream 132516 5717620 ~ 5717948 (+)
G262436 NA other upstream 2848607 2713615 ~ 2714517 (+)
G262423 NA other upstream 3320159 2241408 ~ 2242965 (+)
G262194 NA other upstream 4418117 1139352 ~ 1145007 (+)
G262060 NA other upstream 4852570 710110 ~ 710554 (+)
G261984 NA other upstream 4895742 665800 ~ 667382 (+)
G265391 NA other downstream 328679 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 750174 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location