CI01000063_06271330_06273137 (CHM2A, CHMP2A, BRAFLDRAFT_115689, BC2, CHMP2A.L)


Basic Information

Item Value
gene id CI01000063_06271330_06273137
gene name CHM2A, CHMP2A, BRAFLDRAFT_115689, BC2, CHMP2A.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 6270763 ~ 6273137 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_06271330_06273137.mRNA
ATGGAGTTCCTGTTTGGAAGGAGAAAGACTCCGGAGGAGATGCTCAGACAGAATCAGAGAGCGCTAAATAGAGCCATGCGAGATCTTGACAGAGAACGCCAGAGGCTGGAGCAACAGGAAAAGAAAATAATTGCTGACATTAAGAAAATGGCCAAACAAGGACAGATGGATGCTGTGAAAATCATGGCTAAGGACTTGGTCCGCACAAGACGATACGTTAAGAAATTCATCATGATGAGAGCCAATATTCAAGCTGTCAGCCTTAAAATCCAAACCCTCAAATCAAACAACAGCATGGCGCAGGCCATGAAAGGAGTCACCAAAGCTATGGCCACCATGAACAGACAGTTGAAGTTGCCACAGATTCAGAAGATCATGATGGAGTTTGAGCGCCAAAGTGAAATCATGGACATGAAGGAGGAGATGATGAATGATGCAATCGATGATGCAATGGGAGATGAAGACGATGAAGAGGAGAGTGATGCTGTGGTTTCTCAAGTTCTGGATGAGCTGGGTCTGACTCTGTCTGATGAACTTTCAAACCTGCCTTCTACTGGAGGGAGCCTTTCGGTTGCAGCTGGGAAGAAAGCTGAACCGCAGCCTACACTGGCAGATGCTGATGCTGACTTGGAGGAGAGGCTGAACAACCTGAGGAGAGACTGAGAAAGACTTTCAATGAAGGTTTTGATTCAGAAATGTTTGCGTAAAGCTCGCTTCACTAAAATGTAGACTGATGCAAAGAGAGAGGATGTGAATGCTGTCTTTTTTTCTGACATTTGACGCTTTAATGCGTCCCTTTTGTTTTTATGTCCTCTTTTTATGACATGTGCTGTATAAATGTTACCAAACACATAACCCAAATGAAGATGCAATGCATCAGACTGCCCTCATGCCTTCTGTTTAGACAAATACTTTTAAAGGTGATAAAATCAACAAAGAATCTGCTTACCCTGGGATTCCAACTTGATCTTTTGAGGAAAACTTAACACTAAGTATTTTACTGCTATAAAATTTGGTTTATCACACATCATCTCTTAATTATAACAAACAGACGGTGATCCTAATCTTTTATATAAATAGTGCGAAATGGAGTCACTCCAGTTTTCAATCTGTTCCTATAAGGGAACATCAGAGAATTCTCTTTGAAATACCTGTGCTATTATACTATCATTATCTTCTATTAATATTTTAATCGTGATCTTATAGTGGTAAATACCTTCATATAATAAA

Function

symbol description
chmp2a Predicted to be involved in several processes, including endosome transport via multivesicular body sorting pathway; exit from mitosis; and late endosome to vacuole transport. Predicted to act upstream of or within vacuolar transport. Predicted to be located in nuclear envelope. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP2A (charged multivesicular body protein 2A).

GO:

id name namespace
GO:0007080 mitotic metaphase plate congression biological_process

KEGG:

id description
K12191 CHMP2A; charged multivesicular body protein 2A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_06271330_06273137.mRNA True 1230 mRNA 0.40 5 6270763 6273137

Neighbor

gene id symbol gene type direction distance location
CI01000063_06110909_06118565 NA coding downstream 150844 6110909 ~ 6119919 (-)
CI01000063_06018383_06022776 NA coding downstream 247276 6018083 ~ 6023487 (-)
CI01000063_06011344_06017382 KCTD2 coding downstream 253381 6010663 ~ 6017382 (-)
CI01000063_05992697_06005239 SLC16A5A, SLC16A5 coding downstream 265404 5992579 ~ 6005359 (-)
CI01000063_05983940_05990611 NA coding downstream 280152 5983455 ~ 5990611 (-)
CI01000063_06291489_06291799 NA coding upstream 18077 6291214 ~ 6291799 (-)
CI01000063_06332215_06332433 NA coding upstream 59012 6332149 ~ 6332433 (-)
CI01000063_06404520_06407506 PSME3 coding upstream 130687 6403824 ~ 6407676 (-)
CI01000063_06652744_06663333 DHX8 coding upstream 378999 6652136 ~ 6663590 (-)
CI01000063_07092189_07106801 OGFOD3 coding upstream 818953 7092090 ~ 7107755 (-)
G266006 NA non-coding downstream 11072 6259466 ~ 6259691 (-)
G266005 NA non-coding downstream 11366 6259195 ~ 6259397 (-)
G266003 NA non-coding downstream 14048 6255577 ~ 6256715 (-)
G266002 NA non-coding downstream 15540 6255024 ~ 6255223 (-)
G265960 NA non-coding downstream 35384 6202965 ~ 6235379 (-)
G265976 NA non-coding upstream 9921 6283058 ~ 6290946 (-)
G265985 NA non-coding upstream 31346 6304483 ~ 6304949 (-)
G266016 NA non-coding upstream 46424 6319561 ~ 6319837 (-)
G266017 NA non-coding upstream 47101 6320238 ~ 6320628 (-)
G266018 NA non-coding upstream 47762 6320899 ~ 6321186 (-)
CI01000063_05616519_05617045 NA other downstream 653651 5615806 ~ 5617112 (-)
G265567 NA other downstream 1016823 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other downstream 1080146 5188403 ~ 5189645 (-)
CI01000063_02725759_02726399 NA other downstream 3544228 2725759 ~ 2726535 (-)
CI01000063_02326799_02327290 CBY1 other downstream 3943044 2326741 ~ 2327309 (-)
G266797 NA other upstream 1016358 7289495 ~ 7290224 (-)
G266660 NA other upstream 1165948 7439085 ~ 7441435 (-)

Expression


Co-expression Network