CI01000063_07493274_07509323 (RNF157)


Basic Information

Item Value
gene id CI01000063_07493274_07509323
gene name RNF157
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7493012 ~ 7509323 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_07493274_07509323.mRNA
ATGGGAGCTTTGACAAGCCGTCAGAATGCAGGAGTCGAGGAGGTCGATATACCATCCAGTTCTGTTTACAGATACCCACCCAAATCCGGGAATTATTTTGCTAGCCATTTTATTATGGGAGGAGAGAAGTTTGATTCAACTCATCCTGAAGGCTACCTCTTTGGAGAAAACACTGACCTCAACTTCCTAGGCAACAGACCAGTAGTGTTCCCGTACAATGCTCCCCCTCCTCATGAGCCAGTCAAGACCCTCCGCAGTCTTATCAACATCCGTAAAGACACTCTGCGGCTTGTCCGATGTAGTGAAGACATGAAGCTTCCTGGACAGGAAGTTGGGAAAAGCCACAGCTGCTACAATATTGAGTTCACCTTTGATGCCGACACACAAGTTGCCATCACTATATACTACCAAGCCATTGAAGAGTTTCACAATGGTGTGCCAATATACTTGCCGCAGGACAGCTCTCTGCAGTCAGAGACGGTGCATTTCAAACGCGGTGTCTGCCAACAGTTCTGTCTGCCCTCTCATTACGTCAACTTATCAGAATGGGCAGATGAGGAGCTTTTGTTTGACATGGATAAAGACATCTACCCCATGGTTGTACAAGCAGTAGTGGATGAGGGAGATGAACACTTGGGACACTCCCATGTTCTTCTTGCATCCTTTGAGAAGCATATGGATGGAAGTTACTGTGTGAAACCTTTGAAACAGAAACAAGTGGTGGATGGTGTCAGTTACCTGCTGCAGGAGATCTACGGCATAGAGAACAAATACAACAGTCAAGAATCAAAGGTGGCTGAAGATGAGATTAGCGACAACAGTGCTGAATGTGTGGTGTGTTTGTCAGACGTGCGGGACACACTTATCCTGCCCTGCAGACACCTGTGCCTGTGCAACGCCTGTGCAGACACACTGCGTTACCAGGCCAACTGTTGCCCCATCTGTCGACTACCGTTTCGTGCCCTCCTTCAAATACGAGCGATGAGGAAAAAACTGAGCCCGCTCACACCTACTGGATTCAACCCTGTCATCACCTCGCAGACGTCAGATTCAGAGGAGCACTCGGCATCAGAACACATCCCACCAGGCTATGAAGCTGTGTCCCTGTTGGAGGCCTTGAATGGGCCCCTGAACCCGTCGCCATCTGCTCCTCCACTTCAGGGCCTCACCAGGGGCCATGTTTCTGGATCTGCGCCCACATATGGCAGTGATAGCCACCACACGCCCGTGCGCTCCCTCTCTCCGCTAGAACACTCTGTCAACTCCAGCCAGAATGGGAAACACAAGAAGAGTGGCTCTAAATCCCTCTCCCAGAATTCTTCAGTGCTGCCTGAGGAGGAGGATGAGAAGTCATGCAGTGAGTCTGAAGTGCAAACATGCAGGAGAAAATTGCATGTAGAACAGCAAGAGTCTGGTGTGACTCCTGAAAGTGACAACCTCACTCTGTCATCCTCGGGGGCCATAGATCAGTCGTCCTGCAACGGCACCCCTCTCTCCTCCACGATCACCTCCCCAGAGGACCCAGTAAGCAGCAGCCTGGCCCAGTCTGTGATGTCAATGGCGTCCTCTCATAGCCAGCACTCTCAGATTAGCACCGACACACTCTCTTCAATGTCCGGCTCCTACATGGCTGGGGCAGAGGGAGAGGAGGCCGCTGAGACCCCAGCAGAGAGCCGAGCCCCTTCCCAACATGAGGGTGAGGAAATCCCCATTGAGGCAAAAGGGCATAACTTTGTGGCTGCCATTCTTGAAGAACAGGATTCAGAGGGAAATGACGTGACTGAGGAAGATTGTGCATCTCCCACCAAAGAACATGGTGGGCGCAGGAGGAGCGAGGTGCCTTGTCCAGAGTTTGACAATAACAATCAGGGGCAGTCTGACACCCACTGTATGACAGGCCTGGACAATGAGCAGCCTCCTGATGGCCGATTCGCTGGTCTGTTATACCTTGACGTCTATCGTCATGGGCGGGATCCTTTGACTCACCATGCGTCCACCAGCAACATCAACCTGGACGATCAAGGGGTCACCAATGAGGCAGCAAACTCCAAGAACAAATCTCATCGTGGACCCCTGGCTGTGTGAAATCCTCAATCCACCCAGGCACAGACCTACTCCAATCCTGAGAGGGATATTTGCCTCTTTCTTCATCCCACCTCTGCCTAAACTCATGCCCACACCAATTACTCATGGATCAAATCCTAAATGCAAACCAGGGAGGATTGACTGTGTGGTTTCCTTTCTCCGTTGTGATAGATGTCATGTTTTTAGCGCTCTTTTGGTGTTGATACTTGTGTAAAGCACCACGTTTACACCAACGCTCCACCCCCTCATGTGTACAAATAAA

Function

symbol description
rnf157 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in endosome to lysosome transport; negative regulation of signal transduction; and protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in early endosome; nucleus; and plasma membrane. Orthologous to human RNF157 (ring finger protein 157).

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_07493274_07509323.mRNA True 2347 mRNA 0.51 19 7493012 7509323

Neighbor

gene id symbol gene type direction distance location
CI01000063_07483274_07486490 NA coding downstream 5394 7483102 ~ 7487618 (-)
CI01000063_07458562_07458738 NA coding downstream 34158 7457815 ~ 7458854 (-)
CI01000063_07450175_07455382 ZNF646 coding downstream 37427 7449162 ~ 7455585 (-)
CI01000063_07424567_07426570 NA coding downstream 66442 7424361 ~ 7426570 (-)
CI01000063_07411237_07413430 NA coding downstream 79582 7410175 ~ 7413430 (-)
CI01000063_07516671_07521503 NA coding upstream 7123 7516446 ~ 7521861 (-)
CI01000063_07525686_07551770 DNMBP coding upstream 16363 7525686 ~ 7551770 (-)
CI01000063_07578043_07590189 CPN1 coding upstream 68653 7577976 ~ 7590691 (-)
CI01000063_07605652_07611233 NA coding upstream 96290 7605613 ~ 7611233 (-)
CI01000063_07619266_07636507 GPAM coding upstream 109777 7619100 ~ 7637052 (-)
G266827 NA non-coding downstream 12135 7480634 ~ 7480877 (-)
G266685 NA non-coding downstream 25865 7464469 ~ 7467147 (-)
G266669 NA non-coding downstream 54760 7436797 ~ 7438252 (-)
CI01000063_07377062_07377408 PRR15LB non-coding downstream 111677 7374771 ~ 7377408 (-)
G266817 NA non-coding downstream 140748 7351818 ~ 7352264 (-)
G266647 NA non-coding upstream 2613 7511936 ~ 7515695 (-)
G266833 NA non-coding upstream 13395 7522718 ~ 7522990 (-)
G266670 NA non-coding upstream 83131 7592454 ~ 7592720 (-)
G266846 NA non-coding upstream 179529 7688852 ~ 7689102 (-)
G266660 NA other downstream 51577 7439085 ~ 7441435 (-)
G266797 NA other downstream 202788 7289495 ~ 7290224 (-)
G265976 NA other downstream 1202066 6283058 ~ 6290946 (-)
CI01000063_05616519_05617045 NA other downstream 1875900 5615806 ~ 5617112 (-)
CI01000063_05189361_05189645 CRIPT other downstream 2302395 5188403 ~ 5189645 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013056 NA coding CM030125.1 CM030125.1 18406711 ~ 18433678 (+)