CI01000063_07525686_07551770 (DNMBP)


Basic Information

Item Value
gene id CI01000063_07525686_07551770
gene name DNMBP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7525686 ~ 7551770 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_07525686_07551770.mRNA
GTATACGGTATCGCGCTTTATGAATTCCGGGCCCTTGAGCCAGGTGAGCTGGACTTTGATGTCGGTGATAGGATTCGAATCCTTGCTACGCTGGAGGACGGGTGGTTGGAGGGGCAAATACGTGGCAGAAGAGGAGTTTTTCCCCATCGATTTGTCAAGATGGAAGGGCAGCTGCAAATCGTCCCACAAACTGAGACTTTAACAAGTGAAATTAGTGTACCTGAGAAAGAAGAAGAACATTACACTCCCGATTATACCTCAGTTCAACAAGATCGCTCGGTTCCAGAATATGAGCAAGAGTGGACTACCCAGGAAGACCACACGGTGTGGGACCTGGATTACTTTGAGCGCCGGGAGGAGGAAAGAAAGGATGACCATGTGCGCTACATGCACTCCGATCAAAGTTCTCAAGAGAAAGGAACGACTGCAAGTCAATCACAGGTTCAGTCACAAGAAAGAAGGCGAGAAAGACCACCACCCCCTCACACGCAACCCCGCAGAGCAAGTAGCTCAGCCCACAGTGGAGTTCGAAGGACCAGAATGGGCAGCCCCAATCTGGGTAGACCCCAGCTGCCCCCCAGGCCAAGCCTTCATGCTCTCAGCAACCGGCAAAACAGCAACGGTTCTCACACCAGCTTACGAGAACCTCCCCCAGCACCCATCACGAGGAACCAGAGTCTTAATCTTCCCGCCAGAACCTCACCTAGTTCCACCTGGACAAGAAACAATGGTAGCTATGCCTCTCATGACAGCAGAAACCCCTTCAGCAGTAAAACTTCTGGTGAAAAGAACAGGCAGAAAAAGCTAACTCGACACGCAAGCGTCAATGATTCGGACCTAATATCCGGTGGCCGCAGCGACCACAGGGCATGGTCTCAAGGACAGGGTTCAAATGGGTTACCGACATCTCAGACAATGGGAATTTTGGCTGTGTCAGCTGGGGATCTTGAAGCCAAGCTTTCTGAGCAACTGATAGAATTCGAAAGGAGCTTGCCGGGTCGTGGCAATGGAGCCACGGAACAGAGCCGATGGGAGGAGGTTAGTGGAGGATGGGGCAACAAAGTTTCCCGTCACTTCTCCATTGTGGACTACAGCGATGAGAATGACATAATCCGTGGCTCCTCCCAGTCTTCGATGGAACGTCTGTTACCCACCACTTCCTCTCCCTCTGGTTCTGCCTCCTCCTCTTTGGAAAGACGGAAAACGCTACGCCCACCTCCTCCTCGACCTCGGGTCCTTAGGCCACCAGCACCTACAAACACGCATTGTCCTCAGACGAATGGTCGTATTGCTCCTCAGCCATACAGACCCGCACGTCCAGCGCCACGGCCACCTCCTCCGTGCCCACGCACCAACCCTCGCCCCCCTCCACCAGCTTCCAATCCATTCTATAACTCGCCAGAAGAGGAAGAGACTGTTGAAGAGGAGCAATACAGGTTGCTCCTGAGGTTGGAGGAGGTGGAAAGAGACATTGATATGTATTCTCACACAGCCCAGGAGCTGCAGGCCATGCTGGAAGAAGAGCAGGATGAGACTTCGAGACAACAGGCTCTGGAGAATCTGGAATTCTGCACCTACACCATGGAGACACTAACCCTGGAACAGCAGCAGCTGCAAGAGATGACCCTGCTTGCCTCCCAGCCACAGTCTCTGGAATCATCCCCGGCATCAGCAGCCACCGCTGAAGACCCTGAACAAAGGATGCTGGAGAAAAGATTAAAGGTCATCGAGGAGCTTCTGCAGACAGAACATGACTACATCAAGGATCTTCAGATGTGTGTGAAGGAAATCATTCTGCCTTTGCAGAAGAAACAGGTCCAGAATATTGACTTTGATGGTCTCTTTGGAAACATCAACTCTGTTATTGACCTTTCCCGTCGACTTTACAAGACCCTCCAGGACACTGACTCAATAGGTCAAGTGTTCCTGGACTACAAAGGTGAGTTGGAGGAGGTTTACAAGATCTATTGCCAAAATCATGATGACGCCATCTCTTTACTGGAGACCTATGAGAAGGATGAGAACATCCAGAAGCACGTGTTGGAATGTCTAGAGAAGCTCAGGGGAAAGACAAACTACATTAATCTGGGTTCCTTCTTGATAAAGCCAGTTCAGAGAGTGATGCGGTACCCCCTGCTCCTGATGGAACTGCTCAACACCACTTCTGAGTCGCACCACGACAGGAAGCAGCTTGCCGAGGCTGTGGTGTCAATCAAAGAGATCAACGTCAATATCAATGAATACAAAAGGAGAAAGGATCTTGTGGTGAAGTACCGCAAAGGCGATGAAGACAGGCTCATTGACAAGATCTCAAAGCTGAGTATGCACTCCATCATCAAGAAGTCAAACAGAGTGAGCAGCCATTTAAAGCACCTGACTGGGTTCTCACCTCAGATCAAAGATGAAGCTTTTGATGAAGCAGAGAAAAGATTCAGACTGCAGGAGAGACTCATCAAATCCTTCATCAGGAACATCTCCCTCTATCTGCAGCATATAAGGGAGTCAGCCTCAGTAAAGGTGCTGGCAGCCATCAGTTTCTGTGACATCTACACAGAGCGGCAACAGCAAATGGATCCTGAACGTTTCCAAAGAGCGCATCGATGCATCAGCGACAAACAGTTCACAGAGTTTAAGGAGAGGACAGAAGACCTAGTCATCACTCCCCTCAACCAGCTGCTCAGTATGTTCGCCGGTCCCCACAAACTGATCCAGAAACGTAGAGACAAGCTGCTGGACTACGACAACTGTAAGGAGCGTGCAGAGAGGCTGAAGGACAAGCGCGTGCAGGAGGAGCTGCAGGCGGCGAGGAATAACTATGAAGCACTGAACGCCCAGCTGCTGGATGAGCTGCCCAAGTTTCACAGCGCGGCCGAAGATCTGTTCACCAGCTGTGTGAGGAGCTTCGCCCAAGCCCAGAGAGATTTCGTTTCACTCACGCTGGGAGAACTCACACCACTACTGAAGCTATCTGGTTTGGGTGGCACAGAAGGAAATCTGGTGTCCTTGTTCCAAGAAGAGCACACACGAGTGTTGGATTTACTTCAGAGCTTCAGTTTCTTTCCCGATAATCTTCCCACTACTGTACGCAAGCCTTTTGAGAAGAAGACTCTGGAGAAGCAGAACACCAAGAAGCAACAAGGCCCTCCAAACTATGTACTACAGACGGATGAGCACCGAGCGGGGCTTCTGGCAAGATACGGGCCAGAGAAACTCTTCCAGGCTGAAAGAAATTTTAATGCAGCACAGGACCTGGATGTGTCTGTACTGGAGGGAGACATAGTGGGTGTCATCAAGCAGCAAGACCCCATGGGCAGCCAGAACCGCTGGCTAATAGACAATGGAGTTACGAAGGGCTTTGTATACAGCTCCTTCTTAAAGCCCTACAATCCACGCAGGAGTCAGTCGGATGTTTCCATTGAGAGCCAATCATCAAACGAGTCTGGCTACGGTGGCTCTTCTCCCATGTTCTCACGGCAGAATAGTAACAGCACTCTGACTTTCAACCAGGATACATCGACCGTCAGCTTCTCAACTGTGACGGCGACAGCTCCATCCCAATCTCACACTCGCCCTAATCAGGAGACCACCCTAAGGAAAAACAGAGAGGCTTCCTCAACCAACTACTCCTCCGCCAATCAGAGGGATTCCCTTGACCCCACCTACAGAAACTCGCCCAATCTCAAAGAACTGTCAGAGACAGCCAGTCGAAATAACAGGGAACTCCCAGAGCCTTCCTACCGAAAACCCACCAATCACAGAGACACTTTAGACTCTGATCAAAACACTCCAACCAATCACAGAGATCTCCCAGACTTCTCTGAGACAGATTCTTGTTCCTCCATTAATAATTCTAAAAACTCCAGATATGAATCATCTTCAAGGTATCACGACTCGCGCAGCTCACAGCAAAAACAAAATGGAGACTATTCGGAACAGCAGAGAAGAACACAGCACCCTCCTGAGGAGTATGTAGATCCAGAGCCTGAGCCTGAGATTGATGGACACCAGATATATTACGCTCTTTACTCCTTCAGTGCACGGTGTGCAAATGAGCTCAGCATTTCAGCCAATCAGCGGGTCCGAATCCTTGAGTTCCAGGACATGAATGGCAACCAGGAGTGGTGGCTGGGGGAGGCAGGAGGACGGAGGGGTTACGTCCCATCCAACTACATCCGCAAATCTGAGTACACA

Function

symbol description
dnmbp Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within cilium assembly and kidney development. Predicted to be located in Golgi apparatus; cell-cell junction; and presynapse. Is expressed in brain; eye; neuromast; pronephric duct; and pronephric tubule. Human ortholog(s) of this gene implicated in cataract 48. Orthologous to human DNMBP (dynamin binding protein).

GO:      GO:0005089, GO:0005737, GO:0042384, GO:0005085, GO:0001822, GO:0035023, GO:0035556

KEGG:

id description
K20705 DNMBP, ARHGEF36, TUBA; dynamin-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_07525686_07551770.mRNA True 4191 mRNA 0.50 14 7525686 7551770

Neighbor

gene id symbol gene type direction distance location
CI01000063_07516671_07521503 NA coding downstream 3825 7516446 ~ 7521861 (-)
CI01000063_07493274_07509323 RNF157 coding downstream 16363 7493012 ~ 7509323 (-)
CI01000063_07483274_07486490 NA coding downstream 38068 7483102 ~ 7487618 (-)
CI01000063_07458562_07458738 NA coding downstream 66832 7457815 ~ 7458854 (-)
CI01000063_07450175_07455382 ZNF646 coding downstream 70101 7449162 ~ 7455585 (-)
CI01000063_07578043_07590189 CPN1 coding upstream 26206 7577976 ~ 7590691 (-)
CI01000063_07605652_07611233 NA coding upstream 53843 7605613 ~ 7611233 (-)
CI01000063_07619266_07636507 GPAM coding upstream 67330 7619100 ~ 7637052 (-)
CI01000063_07653502_07666823 GUCY2G coding upstream 101732 7653502 ~ 7667711 (-)
CI01000063_07678778_07683475 ZDHHC6 coding upstream 126536 7678306 ~ 7683543 (-)
G266833 NA non-coding downstream 2696 7522718 ~ 7522990 (-)
G266647 NA non-coding downstream 9991 7511936 ~ 7515695 (-)
G266827 NA non-coding downstream 44809 7480634 ~ 7480877 (-)
G266685 NA non-coding downstream 58539 7464469 ~ 7467147 (-)
G266669 NA non-coding downstream 87434 7436797 ~ 7438252 (-)
G266670 NA non-coding upstream 40684 7592454 ~ 7592720 (-)
G266846 NA non-coding upstream 137082 7688852 ~ 7689102 (-)
G266660 NA other downstream 84251 7439085 ~ 7441435 (-)
G266797 NA other downstream 235462 7289495 ~ 7290224 (-)
G265976 NA other downstream 1234740 6283058 ~ 6290946 (-)
CI01000063_05616519_05617045 NA other downstream 1908574 5615806 ~ 5617112 (-)
CI01000063_05189361_05189645 CRIPT other downstream 2335069 5188403 ~ 5189645 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003275 NA coding CM030139.1 CM030139.1 16799690 ~ 16821020 (-)