G261650


Basic Information

Item Value
gene id G261650
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 64019 ~ 66028 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU296978
GTGGGAAGTGTCAAAAGAATTCTCAGAAATTTATATGGATTTTTATATTGTAAAGACTGACAGAGAATATAAGAAGCAACATAAAGAAATAAATAAAATTAGAACTAAAACGTGAAATAATTTAATTGACAATATATTTGGGCAAAACACCATTAACGGTTTTCCACTGTTTACAACATACCGTCTTATCATGCATTAACACACTGAAGCATGTGCGCCATTAAATATGAATCTGAAACGCTGCATGTTTGCTCTGTTTCTGAATGAAAGGCGCTTTCAAACATTCAATAATTATGGTGAATTAACAAAACTGAAATTAGCTGAGATGTGATTGTGACGTCATGGCAAAGACGCGCAAACTTAGGAGTAGTCGGTTTCTGGCCGTTTTTTACATAACATGAAAAGCATTGCAGGCTATTCTTTTTGTCAGTTTAATCGTACAAACGACTAACATACATTACTCTCGACTGACCAAATATGGGGGTCCGCGCGAAAAAATTTTAATAAAATTTTCTGTCAGAAAAACATTACCTTCAGATGGCATAGGCTGAGAGGGTATAAACTACCATAGAGATGCTGTTTGCAGTAAGACAGTGAAACGATTTGATGTGTCAAACGGAAATAAAACATCGATTCAGCTCGACTGAGACAGGTTGAGTCCTGGTCCTTTACTTTTGGGGGCTTTGAGTAATAACTCGTTATTCTCGGCTTTCAGTCTCTCCACCTCAATCTCCAGTTCCCGCACGCGCTGAGCGCCAGTGCCGTCAGCTGGGGATTCGGGATTTCTCCGGACGTGACGGAGCCAGTTGTTCTCCTCCTCTAACCGCGACATGCACTTTTCCAGCTCCAGGTATTCCCTAACCAGTTCTTGCTTGGACATATTTTGGAGAGTCTCGACGTGGTACCTCTCATAGGTCTCAGAGAAGTCTCTCTGCAAAAACTCCCCACCTGCGTGCCCGGGTCTGCCCATACCGTCGCTACCTCCTCCGCCGCCGCCGCCACCGCCGCCGCCCTCCTCCTCCTCGTCCTCTTCGGCCTCGAAATTCTCATCCTCACTGGCAGTGTCATCGGAGCGGATCGCCCCGGATTTTCGACCGGCCAGCTCTGTGTTGAGGTCAGGTTCTTCGCGGTCGTGTTCCTCCATCAGGAACTGGGTGGTGTTGTACGGGGCGACGGGGAGACCTTTGGCGAACATTTCGGCACGCACCCGCGACGCCCGCGCAGTCTCGCGTTCATCCAGCTCTTTTTTCTCCTCCCAGGTTAATTTGAAGTAAGGCTTCCAGCGGCGCTTTTTTTTGGAGGGTCGCCGTCTGTGCTTCTTCTTGCCCTGGCGGCCATCTGACAGCCCCTCGGTGTTTAGTCTCGTGCATCCAGAGTCTCTCTTATTACTTGTTTTGTCCGCAGGAAACCCGTCGTCACTTGCTGCGTCGCCAGCCTTGGGCTCCGGATCGCTCCTATCCCGGCCGCGGCACATAGAATGTATATCTCCAGACAACAGACCCGGACAGATCTCCAGTTGATTTCTTTGCACTTGCTTCGAGGGGATGACACTTGTCAGACCATCTCTCTGCCGCCCTCTGCTGTCATCCTCCGGTGCAGTTTCTTCTTTAATAAGCTCCATAACTGTACACTCCCACCGTTCAATTCAAATCTCGTGTTTGAGTTACTATGCTACCTAAGACTGTTGATGTTAACTCTTTCCGTTCCCTCTACTATTGACTTCGTTTCTCGACGGATACGAGAACACTTCCCTCCATTACAAACTCCAATTCGCTTCTGCTACGGAGAAGAGTGGGGCTTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU296978 True 1802 lncRNA 0.48 2 64019 66028

Neighbor

gene id symbol gene type direction distance location
CI01000063_00048427_00050917 NA coding upstream 13102 48427 ~ 50917 (+)
CI01000063_00029343_00046485 NA coding upstream 17506 29343 ~ 46513 (+)
CI01000063_00019226_00019794 NA coding upstream 43755 19226 ~ 20264 (+)
CI01000063_00077035_00147667 PLCD3B coding downstream 11007 77035 ~ 147667 (+)
CI01000063_00299119_00371545 NA coding downstream 232942 298970 ~ 371747 (+)
CI01000063_00452557_00462052 ZNF281B coding downstream 386529 452557 ~ 462150 (+)
CI01000063_00473977_00476385 NA coding downstream 407949 473977 ~ 476938 (+)
CI01000063_00478894_00523263 NA coding downstream 412866 478894 ~ 523361 (+)
G261663 NA non-coding downstream 44163 110191 ~ 116239 (+)
G261687 NA non-coding downstream 100713 166741 ~ 167124 (+)
G261706 NA non-coding downstream 316542 382570 ~ 382890 (+)
G261704 NA non-coding downstream 317573 383601 ~ 384049 (+)
G261960 NA non-coding downstream 328100 394128 ~ 394724 (+)
G261700 NA other downstream 186384 252412 ~ 274450 (+)
CI01000063_00533801_00557577 MPP3B other downstream 486771 533801 ~ 558334 (+)
G261984 NA other downstream 599772 665800 ~ 667382 (+)
G262060 NA other downstream 644145 710110 ~ 710554 (+)
G262194 NA other downstream 1077843 1139352 ~ 1145007 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005248 hexim1 coding NC_007123.7 CM002896.2 15565344 ~ 15567104 (-)