G261687


Basic Information

Item Value
gene id G261687
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 166741 ~ 167124 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU297017
CAGGACTTGGCACCTGCACACAGTGCCAAAGCTACCAGTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAATTGGCCAGCAAACTCGCCTGACCTTAACCCCATAGAAAATCTATGGGGTATTGTGAAGAGGAAGATGCAATATGCCAGACCCAACAATGCAGAAGAGCTGAAGGCCACTATCAGAGCAAACTGGGCTCCTATAACACCTGAGCAGTGCCACAGACTGATCGACTCCATGCCACGCCGCATTGCTGAAGTAATTCAGGCAAAAGGAGCCCCAACTAAGTATTGAGTGCTGTACATGCTCATACTTTTCATGTTCACACTTTTCAGTTGGCCAAGATTTCTAAAAATCCTTTCTTTGTATTGGTCTTAAGTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU297017 True 384 lncRNA 0.46 1 166741 167124

Neighbor

gene id symbol gene type direction distance location
CI01000063_00077035_00147667 PLCD3B coding upstream 19074 77035 ~ 147667 (+)
CI01000063_00048427_00050917 NA coding upstream 115824 48427 ~ 50917 (+)
CI01000063_00029343_00046485 NA coding upstream 120228 29343 ~ 46513 (+)
CI01000063_00019226_00019794 NA coding upstream 146477 19226 ~ 20264 (+)
CI01000063_00299119_00371545 NA coding downstream 131846 298970 ~ 371747 (+)
CI01000063_00452557_00462052 ZNF281B coding downstream 285433 452557 ~ 462150 (+)
CI01000063_00473977_00476385 NA coding downstream 306853 473977 ~ 476938 (+)
CI01000063_00478894_00523263 NA coding downstream 311770 478894 ~ 523361 (+)
CI01000063_00533801_00557577 MPP3B coding downstream 366677 533801 ~ 558334 (+)
G261663 NA non-coding upstream 50502 110191 ~ 116239 (+)
G261650 NA non-coding upstream 100713 64019 ~ 66028 (+)
G261706 NA non-coding downstream 215446 382570 ~ 382890 (+)
G261704 NA non-coding downstream 216477 383601 ~ 384049 (+)
G261960 NA non-coding downstream 227004 394128 ~ 394724 (+)
G261962 NA non-coding downstream 234341 401465 ~ 401820 (+)
G261995 NA non-coding downstream 260907 428031 ~ 428336 (+)
G261700 NA other downstream 85288 252412 ~ 274450 (+)
G261984 NA other downstream 498676 665800 ~ 667382 (+)
G262060 NA other downstream 543049 710110 ~ 710554 (+)
G262194 NA other downstream 976747 1139352 ~ 1145007 (+)

Expression


Co-expression Network