G262060


Basic Information

Item Value
gene id G262060
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 710110 ~ 710554 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU297464
ACTAAAAAAAGAGCTTTTTGGCAGCAAACCCACCAGATGGGTTTGGTGCACACATGGATAAAAAGTACCCCATGTCCACGGTTAAATATACTGCTGGATCTTTAATGTTGTGGGCCTATTTTTCTGCTGGAGGTCCTGGACATCTTGTTCAGATACATGGCATCATGGATTCTATCAAATACCAACAGATAAAAAATCAAAACCTGACCGCTTCTGCTAGAAATCCAATAATGGGCCGTGATTGGATCTTCCATCAGGACAATGATCCAAAACAAACATCAAAACCAACACAAAAATGTGTCACTGAGCACAAAATGAA
>TU297463
AGTACCCCATGTCCACGGTTAAATATACTGCTGGATCTTTAATGTTGTGGGCCTATTTTTCTGCTGGAGGTCCTGGACATCTTGTTCAGATACATGGCATCATGGATTCTATCAAATACCAACAGATAAAAAATCAAAACCTGACCGCTTCTGCTAGAAATCCAATAATGGGCCGTGATTGGATCTTCCATCAGGACAATGATCCAAAACAAACATCAAAACCAACACAAAAATGTGTCACTGAGCACAAAATGAA
>TU297466
AGTACCCCATGTCCACGGTTAAATATACTGCTGGATCTTTAATGTTGTGGGCCTATTTTTCTGCTGGAGGTCCTGGACATCTTGTTCAGATACATGGCATCATGGATTCTATCAAATACCAACAGATAAAAAATCAAAACCTGACCGCTTCTGCTAGAAATCCAATAATGGGCCGTGATTGGATCTTCCATCAGGACAATGATCCAAAACAAACATCAAAACCAACACAAAAATGTGTCACTGAGCACAAAATGAAGCTTCTGCCATTGCCATCCCAGTCCCCTGACCTGAACCCTAAAGAAAATGAGTGGAGTGAACTGAAGAGAAGAAGCACCAGCATGGAGCTGGGAATCTGAAGGATCTGTAGAGATTCTGCATGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297464 False 319 lncRNA 0.40 1 710110 710428
TU297463 False 256 lncRNA 0.40 1 710173 710428
TU297466 True 382 TUCP 0.43 1 710173 710554

Neighbor

gene id symbol gene type direction distance location
CI01000063_00669808_00687564 NA coding upstream 22294 669808 ~ 687816 (+)
CI01000063_00659693_00662317 NA coding upstream 47685 659630 ~ 662425 (+)
CI01000063_00562850_00563761 PPP1R3CB coding upstream 146188 562750 ~ 563922 (+)
CI01000063_00533801_00557577 MPP3B coding upstream 152404 533801 ~ 558334 (+)
CI01000063_00478894_00523263 NA coding upstream 186749 478894 ~ 523361 (+)
CI01000063_00737387_00744421 PANK1, PANK1B coding downstream 26656 737084 ~ 745002 (+)
CI01000063_00768000_00776500 SLC16A12B coding downstream 56455 766883 ~ 777761 (+)
CI01000063_00811088_00811849 CH25H coding downstream 100453 810881 ~ 812197 (+)
CI01000063_00839103_00843726 ACTA2, ACTC1A, MGC53823, ACTG2, ACTC1, MGC75582, ACTA1, ACTC1.L, ACTBL2 coding downstream 128085 838513 ~ 843762 (+)
CI01000063_00861534_00863874 ANKRD22 coding downstream 150551 860979 ~ 864105 (+)
G262053 NA non-coding upstream 54449 655436 ~ 655661 (+)
G262043 NA non-coding upstream 81000 628910 ~ 629110 (+)
G262042 NA non-coding upstream 81537 628272 ~ 628573 (+)
G262037 NA non-coding upstream 85301 624559 ~ 624809 (+)
G262034 NA non-coding upstream 88678 621117 ~ 621432 (+)
G262135 NA non-coding downstream 45959 756387 ~ 764451 (+)
G262080 NA non-coding downstream 79034 789462 ~ 809644 (+)
G262150 NA non-coding downstream 119249 829677 ~ 829953 (+)
G262152 NA non-coding downstream 121032 831460 ~ 831718 (+)
G262117 NA non-coding downstream 144734 855162 ~ 855434 (+)
G261984 NA other upstream 42728 665800 ~ 667382 (+)
G261700 NA other upstream 435660 252412 ~ 274450 (+)
G262194 NA other downstream 433443 1139352 ~ 1145007 (+)
G262423 NA other downstream 1530980 2241408 ~ 2242965 (+)
G262436 NA other downstream 2003187 2713615 ~ 2714517 (+)
G265391 NA other downstream 5203355 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 5624850 6335618 ~ 6338283 (+)

Expression


Co-expression Network