G262876


Basic Information

Item Value
gene id G262876
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 956722 ~ 971781 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU298382
CTCGCGCATGACACGGCATTTGAATTTGGAAAAGAAACACAAAACTGACGGGAGCCGCTCCGGTGGAGAACAGTGACTGGATCTAACACCTTCAGATGACACACAGTTCACATCTCTGCGCAGATGAACCAAAAGAACTCGGGTCCCGGTGAACTCCAGCACTCCCCTGACAGTTCATACAGCCTCCCTGCTCCAAGTGTGTCTCAAAGTTCACTGCAAGTGCACCAAAAATAGAAACGTTAATGACGCTGACGTTCCCCTCCATCCTCCCCACCACCACCAGGTTGGCCCTGTCCATCCATCAGGGGTAGGCTCCGCCCCTGCCTTTATCTTCAGGCAGGATCAGCCAAATCTGCATCCCCAGGATTCGGACGAAGGACGGGGCCTATGCCAAAGAACTTTTCCGTACAACTAAACATGAAACATTGTACCATGTTTAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU298382 True 442 lncRNA 0.51 3 956722 971781

Neighbor

gene id symbol gene type direction distance location
CI01000063_00864936_00881531 LIPA, LIPF coding downstream 75191 864319 ~ 881531 (-)
CI01000063_00846790_00858096 STAMBPL1 coding downstream 97344 846622 ~ 859378 (-)
CI01000063_00808299_00809636 NA coding downstream 147086 808060 ~ 809636 (-)
CI01000063_00805911_00806593 NA coding downstream 150090 805911 ~ 806632 (-)
CI01000063_00792983_00795702 NA coding downstream 157508 792436 ~ 799214 (-)
CI01000063_00985283_00999270 PTENB, PTEN coding upstream 12740 984521 ~ 999270 (-)
CI01000063_01015926_01020021 PAPSS2A, PAPSS2B, PAPSS2, PAPS2 coding upstream 44145 1015926 ~ 1020021 (-)
CI01000063_01023917_01026650 MINPP1B coding upstream 51872 1023653 ~ 1027279 (-)
CI01000063_01029007_01032212 NA coding upstream 57201 1028982 ~ 1032212 (-)
CI01000063_01070457_01077403 USP42 coding upstream 98442 1070223 ~ 1077862 (-)
G262970 NA non-coding downstream 3343 953157 ~ 953379 (-)
G262967 NA non-coding downstream 6193 950177 ~ 950529 (-)
G262965 NA non-coding downstream 7721 948588 ~ 949001 (-)
G262964 NA non-coding downstream 8508 947952 ~ 948214 (-)
G262960 NA non-coding downstream 10439 946024 ~ 946283 (-)
G262985 NA non-coding upstream 121851 1093632 ~ 1094713 (-)
G262988 NA non-coding upstream 123566 1095347 ~ 1095623 (-)
G262990 NA non-coding upstream 125659 1097440 ~ 1098132 (-)
G262999 NA non-coding upstream 177831 1149612 ~ 1149869 (-)
G263002 NA non-coding upstream 181108 1152889 ~ 1153127 (-)
CI01000063_01669384_01670016 HBAE1 other upstream 697630 1669317 ~ 1672019 (-)
CI01000063_02177769_02178239 NA other upstream 1204658 2177747 ~ 2178395 (-)
CI01000063_02326799_02327290 CBY1 other upstream 1353331 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 1753978 2725759 ~ 2726535 (-)
G265567 NA other upstream 4190713 5183279 ~ 5183287 (-)

Expression


Co-expression Network